Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq6557 224 3e-54 seq450 131 4e-26 seq2001 93.3 1e-14 seq6817 86.0 2e-12 >seq6557 Length=877522 Score = 224 bits (248), Expect = 3e-54 Identities = 549/819 (67%), Gaps = 20/819 (2%) Strand=Plus/Plus Query 8316 GTTGACGCGTGTGGTCGAGCGCATCGACGAGCTGTTTCACCGCGAGGACCGCGGCGGGAT 8375 |||||||| || ||||| |||||| | ||| || ||||||| | | | || Sbjct 45537 GTTGACGCAGGTTGTCGAACGCATCCAGGAGTTGCACGACCGCGACAATCCTTCAGACAT 45596 Query 8376 CACCGGAACGCCGACCGGATTTGTCGACTTAGACGCGC-GACTCGACGGTATGCATGGCG 8434 ||| || ||||||||| ||| ||||| | ||| | ||| | ||| | || || Sbjct 45597 CACGGGGGTGCCGACCGGTTTTCTCGACCTCGACCAGAAGAC-CTCCGGCCTCCAGCCCG 45655 Query 8435 GTGAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATA 8494 |||| |||| ||||||| |||||||||||||||||| || || || | || |||| | Sbjct 45656 GTGACCTGATCATCGTCGCCGGACGGCCGTCGATGGGTAAAACGGCCTTTGCCCTGAACA 45715 Query 8495 TCGCAGAGCATGTCGCCATCGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGC 8554 | || || |||| ||| | | | | ||||| ||||| ||||| ||| |||||||| Sbjct 45716 TTGCGGAAAATGTTGCCGTGGAGAGCGGGTTGCCGGTCGGGGTCTTCTCGATGGAAATGG 45775 Query 8555 CG---ACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACA 8611 | ||| ||| || ||||||||||||| || |||| |||| || | | || Sbjct 45776 GGGGCACCCAAC---TGGCCATGCGCATGCTCGCCTCGATCGGCCGTCTCGACTCACACC 45832 Query 8612 GGCTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAG 8670 | |||| |||| || ||| | || ||||| ||| |||| || | | | ||| ||| Sbjct 45833 GCGTGCGTTCCGGGCGGCTCAACGACGACGAATGGTCGCGGCTTTC-CTTCGCGCTCGGC 45891 Query 8671 CTGATGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCGATCACCCCGTCGAAATT- 8729 | || ||| |||||| | | || ||| | || |||||||| | || | Sbjct 45892 AAGCTGCACGAGGCGCCCATTTACATCGACGAGACGGGCGGTCTCACCCCGGCCAACCTG 45951 Query 8730 CAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCG---GCTCGGGATGATTGTCGT 8786 | | ||| | ||| |||||| ||| | | |||| | |||||| |||| || | Sbjct 45952 CGCGCCCGTGC-GCGCCGCTTGGCCCGCCAGTACGGCGGCAAGCTCGGCCTGATCGTGAT 46010 Query 8787 TGACTACCTGCAGCTGATGTCGGGTGAC-GGCGGCGGATCTGAAATGCGGGCCACCGAGG 8845 |||||| | ||| ||||| || || ||| | ||| || | |||||||| || | Sbjct 46011 CGACTACATCCAGTTGATGAGCGGCAACCGGCAG-GGA---GAGAACCGGGCCACGGAAG 46066 Query 8846 TCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCG 8905 || |||| || ||||| | |||| | || ||||| | | || |||||| ||| Sbjct 46067 TCTCCGATATCTCGCGTTCGATCAAGTCGCTGGCCAAGGAGTTACAGGTACCGATCGTCG 46126 Query 8906 CGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCG 8965 | ||||||||||| || | ||||| | ||| ||||||| || | ||||||| Sbjct 46127 CCCTGTCGCAGCTGTCGCGCAAGGTCGAGGAGCGCAACGACAAGCGTCCGATGATGTCCG 46186 Query 8966 ATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCG 9025 | |||||||| || || || || ||||||||||| ||||| || | | || ||||||| Sbjct 46187 ACCTGCGCGAATCCGGCGCCATTGAGCAGGATGCAGACGTTATTTTGATGATGTACCGCG 46246 Query 9026 ATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGC 9085 | || ||| || ||||| | | || || | |||||| | || || | |||| Sbjct 46247 AGGAATACTACAAGCCCGATACGCCCGACAAGGGCATCGCCGAAGTGATTATCGGCAAGC 46306 Query 9086 AGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATTCC 9124 |||| ||||| |||| ||||| || || || || |||| Sbjct 46307 AGCGTAACGGCCCGACCGGCACTGTTCGCCTAGCCTTCC 46345 >seq450 Length=27002 Score = 131 bits (144), Expect = 4e-26 Identities = 242/349 (69%), Gaps = 6/349 (2%) Strand=Plus/Minus Query 8762 GCGGCCGGCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATGT-CGGGT-GACGGCGG 8819 ||||| ||| || || | || |||||||||||||| |||||| ||| | || || Sbjct 21541 GCGGCACGCTGGGCCTGGTGGTGGTTGACTACCTGCAACTGATGAGCGGCTCGAGCACGA 21482 Query 8820 CGGATCTGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGC 8879 || |||| ||||| || | ||| |||||| ||||||| || ||| | || Sbjct 21481 ACGAG--GAAAACCGGGCGACGACGATCGGCGAAATCTCGCGCGGGCTGAAATCGCTGGC 21424 Query 8880 GAAGGAACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCG 8939 |||||| | | |||| | || || ||||||| | || || | | |||| || Sbjct 21423 CAAGGAATTGCAATGTCCGGTGATTGCCTTGTCGCAATTGAACCGCTCGGTGGAGACGCG 21364 Query 8940 CCCAAACAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGC 8999 || ||||||| || | ||| || ||||| || ||||| || ||||| |||||||| Sbjct 21363 GCCCGACAAGCGCCCGATGATGAGTGACCTGCGGGAATCGGGCGCCATCGAACAGGATGC 21304 Query 9000 CGACGTGATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCA-GATCGCG 9058 |||||||||| | || ||||||||||| ||| ||| ||| ||| || | || | | Sbjct 21303 CGACGTGATCATGTTCATCTACCGCGACGAGTACTACAACAAGGAC-TCGAAGGAGCCGG 21245 Query 9059 GTACGGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCAC 9107 | ||| || |||||||| | |||||||| |||||||| | ||||| Sbjct 21244 GCGTGGCTGAGATCATCATCGGCAAGCAGCGCAACGGGCCCACGGGCAC 21196 >seq2001 Length=3286380 Score = 93.3 bits (102), Expect = 1e-14 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 8960 TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCT 9019 || |||| |||| || || || |||||||||||||| ||||||||| || | ||||||| Sbjct 1539159 TGGCCGACTTGCGTGAATCCGGCGCGATCGAGCAGGACGCCGACGTGGTCATGTTTATCT 1539218 Query 9020 ACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCG---CGGTACGGCCGAAATCATCA 9076 | ||||| || |||||| ||| | | | | || || || | || || || |||| Sbjct 1539219 ATCGCGAAGATGTCTATGACC---AGAACTCTGAGCGAAAAGGCATTGCTGAGATTATCA 1539275 Query 9077 TTGCGAAGCAGCGAAACGGGCCGATTGG 9104 | ||||| ||||||||||||||||| Sbjct 1539276 TCAGCAAGCATCGAAACGGGCCGATTGG 1539303 >seq6817 Length=1008 Score = 86.0 bits (94), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 12/156 (8%) Strand=Plus/Plus Query 8854 ATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCGCGCTGTCG 8913 || |||||| | || ||| ||||| || || ||||| |||| || ||||| || ||| Sbjct 693 ATTTCGCGCTCGCTTAAAGCCATTGCCAAAGAGCTCGATATTCCAATTATCGCACTATCG 752 Query 8914 CAGCTTAATCGAGGGCTCG--AGAATCGCCCAAA--CAAGCGGCCCGTCA--TGTCCGAT 8967 |||||||| | ||||| ||||||| | || ||| || || ||| | ||||| Sbjct 753 CAGCTTAACC----GCTCGGTTGAATCGCGCGAAGGCAAACG--CCCTCAACTTTCCGAC 806 Query 8968 CTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGAC 9003 || || || |||||||| || ||||||||||||||| Sbjct 807 CTTCGTGAATCGGGTGCCATTGAGCAGGATGCCGAC 842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127531914038256