Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6036 764 0.0 seq1443 84.2 3e-11 >seq6036 Length=8020 Score = 764 bits (846), Expect = 0.0 Identities = 796/1038 (77%), Gaps = 6/1038 (1%) Strand=Plus/Minus Query 7495 AACAGCAGGTGCTTTGAGAGCAACAGG-AGTGTTCTCAGCAGCAGCAAGGTCAAGAGGGA 7553 |||||| || ||| | | |||||| || | | | ||| | | ||| | || | |||| Sbjct 1067 AACAGCTGGAGCTGTTAAAGCAACTGGTAATACT-TCACCTGAAGCTAAATCTAATGGGA 1009 Query 7554 AGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGT 7613 ||||||| || ||||| |||||||| |||||||| || | | |||||||||| | | | Sbjct 1008 AGTTGTGCGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAACGATAT 949 Query 7614 CTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTGAAAC 7673 | ||||| ||||| | ||||||||||| ||| | | || |||||||||||||||| Sbjct 948 CAGCCCAAGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTTGAAGTTGAAAC 889 Query 7674 CGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACAACTG 7733 |||| | |||||| ||||| || |||| ||| | |||||| |||||||| || | ||||| Sbjct 888 CGTTTAAGTTGAACGCCATAGTACTAATACCCATAGCAGTTAACCAGATACCTAAAACTG 829 Query 7734 GCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGA 7793 ||||| || | ||||||||| | | ||| ||||||||||| |||||||||||||||| Sbjct 828 GCCATAAAGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAATGAAGCGTATTGGAAGA 769 Query 7794 TCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGA 7853 | | |||||| ||||| |||||||| |||||||||||||| || |||||||||||||||| Sbjct 768 TTAAACGACCGAAGTAACCGTGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGACCGA 709 Query 7854 ACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTA 7913 | || ||||| ||||| || || ||||| |||||||||| | |||||| |||| Sbjct 708 ATTTGTAACCGTAGTTAGTTGATTCGCTTTCAGTTGTTTCACGAATTAAAGAAGAAGTTA 649 Query 7914 CAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAGCA 7973 | | ||||| ||||| || ||| | |||||||||||| |||||||| || || || Sbjct 648 CTAATGAACCGTGCATAGCTGAGAATAAAGAACCACCAAATACACCAGCAACACCAGCCA 589 Query 7974 TGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAACG 8033 ||||||| |||||||| | ||||||||||| |||||||| || | |||| ||||||| | Sbjct 588 TGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACTAACATGAAGTTGAAAG 529 Query 8034 TACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACGA 8093 ||||||| || || | ||||||| | |||||||| ||||||||||| | || || || | Sbjct 528 TACCAGAAATACCTAAAGGCATACCATCAGAGAATGAACCTTGACCAATTGGGTATACTA 469 Query 8094 GGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATCCAGGGACGCA 8153 |||||| ||||| ||||| || |||||||||||| | ||||| ||||||| ||||||| Sbjct 468 AGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAGAAAGCTACGAAGATCCAAGGACGCA 409 Query 8154 TACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA--CCGATCAG 8211 |||||| ||||||||| | |||||| |||||||||||||| | || | || || | | Sbjct 408 TACCTAAACGGTAAGATAATTCCCATTCACGACCCATGTAAG-AT-GCTACTCCTAATAA 351 Query 8212 GAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAGC 8271 |||||| | | | | |||| |||||||||||||||| | ||||||||| | ||||| Sbjct 350 GAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCGATTGAAGC 291 Query 8272 TGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACC 8331 ||||||||| || || |||||||| | ||| |||||||||||| ||| | ||| ||||| Sbjct 290 TGCTTCCCAAATTGGGTAGAAGTGCATACCGATAGCGTTAGAACTAGGGATAACTGCACC 231 Query 8332 AGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAAT 8391 ||||||||||||||| || || | | ||||| || || || |||||||| || || || Sbjct 230 AGAGATGATGTTGTTACCGTATAATAATGAACCTGCTACTGGCTCACGGATACCATCGAT 171 Query 8392 GTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAGCAGCGAGCAGCGT 8451 || || |||||||| |||| ||| |||| |||| ||||| || || | | | || Sbjct 170 ATCAACTGGAGGAGCTGCGATGAATGCGATGATGTAACAAGAAGTTGCTGTTAATAATGT 111 Query 8452 AGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCA 8511 ||| | ||| | ||| |||||||||| || | ||| || | || || | ||| Sbjct 110 AGGGAACATTAAACAACCAAACCAACCGATGTATAAACGGTTTTCAGTACTAGTAATCCA 51 Query 8512 GTTACAGAATTGTTCCCA 8529 |||||| ||||||| Sbjct 50 ACCACAGAAACGTTCCCA 33 >seq1443 Length=15309 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 31291 GCGGAGAGGGTGGGATTCGAACCCACGGAG-GCTTTCA-CCTCGCTAGTTTTCAAGACTA 31348 ||||| |||||||||||||||||||||| | |||| || || ||| ||||||||||| Sbjct 12836 GCGGACAGGGTGGGATTCGAACCCACGGTGAGCTTGCACCCACGCCGGTTTTCAAGACCG 12895 Query 31349 GAGCCTTCAACCACTCGACCACCTCTCC 31376 | ||||| |||| |||| |||||| ||| Sbjct 12896 GTGCCTTAAACCGCTCGGCCACCTGTCC 12923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622054531003840