Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq329 109 7e-19 seq1514 89.7 6e-13 >seq329 Length=129497 Score = 109 bits (120), Expect = 7e-19 Identities = 254/377 (67%), Gaps = 12/377 (3%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||||||||| || ||||| | | |||| || || ||||| || || || || Sbjct 85192 CGATCAAAGCGCCCCGGGCGCAACAAGGCGGGATCGAGAATATCCGGACGATTGGTTGCA 85251 Query 12762 GCGATGACAACGATGCC--CGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGAT 12819 |||||||| | ||| || ||| | | || || |||||||||||| || | || | Sbjct 85252 GCGATGACGATGATCCCGGCGTGACCT--TCAAAACCATCCATCTCAACCAGCATCTGGT 85309 Query 12820 TGATGGTTTGTTCACGTTCATCATTCGCG-GGCATACCACCCGCACTGCGTTGCTTACCG 12878 | | ||| || || || || ||||| || || | || |||| ||| || |||| Sbjct 85310 TCAGGGTCTGCTCGCGCTCGTCATTGCCGCCGCCGA-GGCCGGCACCGCGATGACGACCG 85368 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACA---CGGTTGATTTTCACGGGCAACTTCA 12935 || || || |||||||||||||| | ||| || || || || | |||| || Sbjct 85369 ACCGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTGCTTCT---TGGCATTCTCG 85425 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || || || || || | | |||||| || || || ||||| || ||||| | || | || Sbjct 85426 AACATGTCGCGTACGCGCGCGGCACCCACGCCAACGAACATTTCAACAAAGTCGGAGCCG 85485 Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 ||| || ||| || || |||| |||||| || || || || || || | || || Sbjct 85486 GAAATGCTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCCGCGCCAGCAAAGTTTTG 85545 Query 13056 CCCGTCCCTGGTTTCCC 13072 |||||||| || || || Sbjct 85546 CCCGTCCCCGGGTTGCC 85562 >seq1514 Length=8380 Score = 89.7 bits (98), Expect = 6e-13 Identities = 288/443 (65%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 116749 TCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAG 116808 || || ||||||||||| || | || || ||||| | || | || ||||| ||| Sbjct 3775 TCTTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCA 3716 Query 116809 CGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGC 116868 || |||||| | || || || ||| | ||||| || | | ||| || ||| Sbjct 3715 CGCATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGC 3656 Query 116869 CACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATAC 116925 || || |||| || | || | ||| |||||||| | ||| |||| | |||||| Sbjct 3655 CAAGGCTCCAAATATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAG 3596 Query 116926 CTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTC 116985 | || || | || ||||| || | |||||| || || || | || ||||||||| Sbjct 3595 CGAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTA 3536 Query 116986 CC--CCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTG 117043 || |||||| || | |||| || |||| || ||| | |||||||| || | Sbjct 3535 CCTTTTATATACGA-ACCAG-TGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCG 3478 Query 117044 CCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCAC 117103 || | | ||| |||| || || | | | | | |||| || ||||| || ||||| Sbjct 3477 CCGATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGT 3418 Query 117104 CCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGA 117163 | || | | | | ||||| ||| | |||||| |||||||||| || ||||| | Sbjct 3417 CTTTCATGGTTAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATA 3358 Query 117164 GGGTTGGTGTCGCGTGGATGAAC 117186 || || || || ||| | ||| Sbjct 3357 ATGTGGGAGTGGCATGGGTAAAC 3335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613437904361760