Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq224 132 4e-25 seq361 100 2e-15 seq4868 98.7 8e-15 seq3890 98.7 8e-15 seq148 87.8 1e-11 seq8012 86.0 5e-11 >seq224 Length=2126973 Score = 132 bits (146), Expect = 4e-25 Identities = 672/1053 (64%), Gaps = 35/1053 (3%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || |||||||| |||| |||||| ||||||||||||| ||||| || | | ||| || Sbjct 1750993 ATTCCATTGGCGTCCATATCAAACGTGACTTCAATTTTTGGGACTCCACGAGGTGCATGT 1751052 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || || | | ||| ||||| || ||| || || ||||| | |||||| Sbjct 1751053 GGAATTCCAGAAAGGTCAAAAGTTCCGAGTAAATTGTTGTCCTTAGTCATAAATCGTTCT 1751112 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || || || | ||| || || || ||| ||| ||||| ||||| | || | Sbjct 1751113 CCTTCAAATACTTGAATGGTGACACCAGGTTGGTTATCCTCGTAAGTACTGAACGTTTGT 1751172 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 |||| | || || || | ||| | || || || |||||||| | || | || Sbjct 1751173 TGTTTTCTGCATGGGATATGAGCGTTACGCTCGATGATCTTGGTCATGACGCCTTCCGCA 1751232 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 ||||| | ||| || || ||||| | || || || || | | | ||| | ||| | Sbjct 1751233 GTTTCGATACCGAGTGAGAGAGGTGCCACGTCCACCAGTAGCACGTCTTGGA-TTTGACT 1751291 Query 517574 TC-AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 517632 | || | |||| || || |||||||| | ||||||||||| || ||||| || || Sbjct 1751292 GCTCGTGTCACCACTCAGGATGGCTGCTTGCACTGCAGCACCATAAGCCACAGCCTCGTC 1751351 Query 517633 AG----GATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 517688 || ||| |||| |||| || ||| || |||||||| | || | || | Sbjct 1751352 AGGGTTGATGGACAGATTCA--AAG--GTTTGCCGTTGAAAAATCCTTGTAGTAATTTTT 1751407 Query 517689 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA---TT 517745 | ||||| || |||| || ||||| || | |||| || || | ||| || Sbjct 1751408 GGATTTTAGGGATGCGAGTGGAACCTCCGACGAGGACAACATCGTGAA---TTGAACCTT 1751464 Query 517746 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGT 517805 | |||| ||| | || | | | | ||| || ||| | ||| |||| || || | Sbjct 1751465 TGTCCATTTTAGCGTCAGCGAGAGCATGTTCCACCGGTACCAGAGTTGCTCGGAATAAAT 1751524 Query 517806 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 517865 | ||||||||| ||||| ||| | | || || || | |||| | |||||| Sbjct 1751525 TAGCACAAAGTTCCTCGAAGCGAGCACGTGAAATCTTGGTATAAAAATCCACCCCTTCGT 1751584 Query 517866 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 517925 |||| | ||| | |||||| | | || | | |||| | ||||| || | | Sbjct 1751585 ACAATGCATCGATTTCAATACTGGCTTCGGAACTACTGGATAACGTGCGTTTCGCTCTCT 1751644 Query 517926 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA-TTGAT-TCAAATCTGTTTTATA 517983 | |||||||| | || | ||||| || | || || | | | |||| | ||||| Sbjct 1751645 CGCATGCTGTACGAAGACGACGTAACGC--ACGAGGACTTCCTCTGATATCTTTGTTATA 1751702 Query 517984 TTTTCTCTTGAAA-TCTTCAACACACCATGTTACA--AGACGATTATCAAAATCTTCACC 518040 || | |||||| || || ||| ||| | || | ||||| || || |||||||| Sbjct 1751703 CTTGC-GTTGAAACTCGTC--CACGAAATGCTTCAGCAAGCGATTGTCGAAGTCTTCACC 1751759 Query 518041 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCAAGAGA 518097 || | | || | ||||| ||| ||| | || | ||| | || || |||| | Sbjct 1751760 ACCAAGATGTGTGTCTCCTGCCGTGGCTTTCACCTCGAACAACGAGCCCTCGTCAATCGT 1751819 Query 518098 CAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 518157 | | | |||||| ||||| ||||| | ||| ||||| || || || |||| | Sbjct 1751820 AAGGATGCTGACATCAAATGTTCCGCCACCGAGATCGAAAATCAGCACGTT--TTTC-TC 1751876 Query 518158 GTCTT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 | ||| ||||||| || || || || || | || ||||| || |||||||| || || Sbjct 1751877 GCCTTTCAGGTTTTTGTCGAGGCCGTAAGCGAGTGCGGCAGCTGTGGGTTCATTGATGAT 1751936 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | | || || || || ||||| || || || || ||||| || | ||| | || Sbjct 1751937 ACGTATTACGTTCAGTCCTGCAATGGCCCCCGCGTCCTTGGTGGCCTGACGTTGAGCGTC 1751996 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 || || || || || || || || ||||| || Sbjct 1751997 ATTGAAGTAAGCGGGCACCGTGATTACGGCGTC 1752029 >seq361 Length=37659 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| || |||||| | |||||||| | | || ||| || || |||| |||||| ||| Sbjct 10662 CAAAGATGGTATTGTTGGGATTAATGGAAACTCGATTCTTCGCAGCATATCCAATGAGAC 10603 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | |||| ||||| || | |||||| ||| ||||| | || ||||| ||||| |||| Sbjct 10602 ATCCTGTTTCTGTGAAGGCAACATAACCTGGGGTTGTAAGGTTTCCTTGGTCATTGGCAA 10543 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 ||||||| || || |||| ||| | | |||||||| Sbjct 10542 TAATTTCGACCTTTCCATGTTGTAAAATTTCTACACAA 10505 >seq4868 Length=209799 Score = 98.7 bits (108), Expect = 8e-15 Identities = 324/501 (65%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 517220 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 517279 || ||||| ||||| |||||| || || || || | ||||||||| | | || | Sbjct 206240 ATTGTAATTTTCTTTTCTTTGTTGGTCGACTTCTCCACAGCAGTCACAATCAAGATGCTG 206181 Query 517280 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 517339 |||||||| | || || || || |||| || || ||||| | ||||| || || Sbjct 206180 TTGGCATCAATGTCGAAGGTCACCTCAAACTGCGGCGTACCTCTAGGGGCAGGAGGTATT 206121 Query 517340 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 517399 || || |||| ||||||| ||||| ||||| || | |||||| |||||| Sbjct 206120 CCAGTCAGCATAAACTTTCCCAGCAGCTTATTGTCTTTTGTCATGGCTCGTTCTCCCTCG 206061 Query 517400 AAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTT 517458 | | || || ||||| | || ||| || || || || || || || || | | Sbjct 206060 TACACCTGAATGAGTAAGCA-AGATTGGTTGTCCGAGTATGTGGTGAAGGTCCTAGTCTG 206002 Query 517459 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTC 517518 |||| ||||| || || || | | || | ||||| | ||||| || ||||| Sbjct 206001 TTTAGTTGGAATGGTGGTATTACGCTTGATCAGGGCAGTCATCACCCCACCGGCAGTTTC 205942 Query 517519 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 517578 | |||| || | |||||||| || | || | || | ||||| | ||| | Sbjct 205941 AATTCCAAACGACATGGGAGTGACGTCGAGAAGTAGCATGTCTTGAACTACCTCAGACTT 205882 Query 517579 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 517638 | || ||||| || || || ||| || || || || |||| ||||| || || Sbjct 205881 ATCGCCTCTGAGAATGGCAGCCAAAACAGCCGCTCCGTAAGCCACAGACTCATCCGGGTT 205822 Query 517639 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 517698 | || || || |||| |||||||||||||| | | |||||||| | || || Sbjct 205821 TATAGATTTGTTCAGTTCCTTACCATTGAAAAATTCTTTTAGAAGTTGCTGAATTTTTGG 205762 Query 517699 AATACGAGATGATCCTCCAAC 517719 ||| || | ||||||||| || Sbjct 205761 AATGCGGGTTGATCCTCCGAC 205741 >seq3890 Length=880544 Score = 98.7 bits (108), Expect = 8e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| || || ||| | || || || || |||||| || || ||||||||||| ||| Sbjct 736694 CAAAGATGGTGTTGTTGGGGTTCATGGCGACTTGATTCTTTGCAGCATCTCCAATGAGAC 736753 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | ||||| ||||| || | |||||| || ||||| || || ||||| ||||| |||| Sbjct 736754 GCTCTGTGTCTGTGAAGGCAACATAACTAGGCGTTGTACGGTTTCCTTGGTCATTGGCAA 736813 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 ||||||| || || || | || | || || |||||| | || || || || |||| Sbjct 736814 TAATTTCGACCTTGCCGTGCTGGAAGACTCCCACACAAGAGTATGTGGTGCCCAAGTCAA 736873 Query 518703 TACC 518706 | || Sbjct 736874 TTCC 736877 >seq148 Length=52510 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||| | ||||| || | | || ||| || || ||||||||||| ||| Sbjct 6310 CAAAGACGGTATTGTTGGGATTCATGGAAACTAGATTCTTCGCAGCATCTCCAATGAGAC 6251 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 |||| ||||| || | |||||| ||||||||| || || ||||| ||||| | || Sbjct 6250 AGCCTGTTTCTGTGAAGGCAACATAACTTGGAGTTGTACGGTTTCCTTGGTCATTGGGAA 6191 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 ||||||| | || || | ||| | | |||| |||| Sbjct 6190 TAATTTCGATCTTTCCTTGTTGTAAAATTCCTATACAA 6153 >seq8012 Length=288746 Score = 86.0 bits (94), Expect = 5e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 |||| |||||||||||||||||||||| | || | || | |||| | |||| || Sbjct 10826 ACGACTATCAAAATCTTCACCTCCCAAATGCGTGTCACCAGCAGTAGACTTAACTTCAAA 10885 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 || |||||||||| || ||||| | ||||||| || || ||||||| |||||||| Sbjct 10886 AATACCATCTTCAATAGTCAAAATTGATACATCAAATGTGCCTCCACCCAAGTCAAAAAT 10945 Query 518140 AAGTACATTC 518149 || || ||| Sbjct 10946 CAGAACGTTC 10955 Score = 86.0 bits (94), Expect = 5e-11 Identities = 154/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || || || || | |||||| || || ||||| || ||||| | | ||| Sbjct 11034 TTTTTGTCGAGGCCGTAAGCGATAGCAGCGGCGGTGGGTTCGTTGATAATGCGGAGAACG 11093 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| | | || |||||||||||| |||||||| | ||| || |||||||| || Sbjct 11094 TTAAGGGCGGAGATCACTCCTGCATCTTTGGTGGCTTGACGTTGCGAGTCGTTAAAGTAA 11153 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || || || || || || || | || ||| ||||| | ||| ||||| || || | Sbjct 11154 GCGGGCACCGTGATTACAGCGTTCGTCACTGTCTTACCGAGATA--CGCTTCAGCAGTCT 11211 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 ||||| || | | | ||| || ||||| ||||| || Sbjct 11212 CCTTCATCTTTGTCAGCACCATCGAGCTAATTTCCTCTGGCGA 11254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780374003915416