Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1514 123 3e-23 seq329 122 1e-22 seq2502 105 8e-18 >seq1514 Length=8380 Score = 123 bits (136), Expect = 3e-23 Identities = 533/822 (65%), Gaps = 27/822 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||||||| | ||| ||||||| || || | ||||| ||||| |||||| || || | Sbjct 3242 CCCACAGCATATGCTCATGCGTGTAGCTGTAGGTATTCATGGTATAGATATCGACTCGGC 3301 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATG-TTCATCCACGCAACACCAACCCTCT 111729 | || || || | | || | | ||| || | ||| || || || || | | Sbjct 3302 CATTGAAACCTATAATTTACTTTCA-GAGCGATGGTTTACCCATGCCACTCCCACATTAT 3360 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTG-CAAACAAGGAG 111788 |||| || |||||||||| || || | || || || ||||| | | || || Sbjct 3361 TCAATGCAGGTACACCAAAGCCACAGCTATCGTCATGCTTT-TTATTAACCATGAAAGAC 3419 Query 111789 GATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCT 111848 || ||||| |||| ||||||| || | | |||||||| |||| ||| | | ||| Sbjct 3420 GACTCAATAGATGGTATTTACGATACATTAAAGCAATGTGCCAAAATATCACAATCGGCG 3479 Query 111849 GGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATT--AGAGGTA 111906 |||||||| || | ||| ||| |||| || |||| | || |||||| | ||||| Sbjct 3480 GGTGGTATTGGCCTAAGCATACATAATGTAAGGGCCA-CTGGT-TCGTATATAAAAGGTA 3537 Query 111907 CAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCT 111966 ||||||| ||| | || || || |||||| | || ||||| || | || || |||| Sbjct 3538 CAAATGGCACTTCAAACGGCATAATACCAATGTTGCGGGTATTCAATGATACCGCTCGCT 3597 Query 111967 ATGTAAACCA---AGCTGGGCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 ||||| | || || ||| |||||||| || | || | ||| | ||||| |||| Sbjct 3598 ATGTAGATCAGGGAGGTGGCAAGCGCAAGGGCTCATTTGCCATATATTTGGAGCCTTGGC 3657 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 | || ||| | | ||| | | | ||| ||||| ||| | || || || || Sbjct 3658 ATGCCGATGTTTTTGAGCTTTTGCAATTGAAGAAAAACCACGGTAAAGAAGAAATGC-GT 3716 Query 112084 GC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 || || ||||| || | ||| | ||||| || ||| | || |||||| | || || || Sbjct 3717 GCTCGTGATCTTTTTTACGCCATGTGGATACCTGATTTATTTATGAAGCGGGTGGAAGAT 3776 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 | | | |||||| || | || || || || || || || | ||||| | || Sbjct 3777 AACGACGTTTGGTCGCTAATGTGCCCCAACGAATGC-CCAGGCTTGGCCGATTGCTATGG 3835 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGA---GGAAG--AAAGT-CGGGCGACTGC 112255 |||| ||||||| || |||||| ||||| |||| ||||| || || | Sbjct 3836 CGAGGCATTTGAAGAGCTTTACACACGTTACGAAAGAGAAGGAAAAGTACGTAAAACGGT 3895 Query 112256 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 | | | || | ||| | |||| |||| ||| |||| || ||||| || Sbjct 3896 AAAAGCCCAAG--ACTTATGGTTTGAAA--TATTGGAAAG--CCAAATGGAAACTGGCAC 3949 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 ||| || ||||| | ||||| || ||| || ||||| ||||| || | || Sbjct 3950 ACCCTACATGCTATTTAAAGATGCAGCCAACTCGAAAAGTAACCAAAAAAACCTTGGCAC 4009 Query 112376 GATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC 112417 || || || || ||||| ||||| ||||| |||||| ||| Sbjct 4010 CATAAAAAGCTCAAACCTTTGTACTGAAATAATGGAATATAC 4051 >seq329 Length=129497 Score = 122 bits (134), Expect = 1e-22 Identities = 257/379 (68%), Gaps = 16/379 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||||||||| || ||||| | | ||| ||| || ||||| ||||| ||||| Sbjct 85192 CGATCAAAGCGCCCCGGGCGCAACAAGGCGGGATCGAGAATATCCGGACGATTGGTTGCA 85251 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 |||||||| | || || | ||| | ||||||||||||||||| || | |||| Sbjct 85252 GCGATGACGATGATCCCGG---CGTGACCTTCAAAACCATCCATCTCAACCAGCATCTGG 85308 Query 16002 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 || | || || || || || ||||| ||| | | || |||| ||| || | Sbjct 85309 TTCAGGGTCTGCTCGCGCTCGTCATTGCCGCCGCC--GAGGCCGGCACCGCGATGACGAC 85366 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGATTTTCGCGAGCGACTT 16116 | || ||||| || || |||||||||| |||||| || || || | | || | Sbjct 85367 CGACCGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTGCTTCTTG---GCATTCT 85423 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 | || | || ||||| ||| ||| ||||| ||||| ||||| || ||||||| | | Sbjct 85424 CGAACATGTCGCGTACGCGCGCGGCACCCACGCCAACGAACATTTCAACAAAGTCGGAGC 85483 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 ||||| || ||| || || || | |||||| ||||| || || || || | ||| | Sbjct 85484 CGGAAATGCTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCCGCGCCAGCAAAGTTT 85543 Query 16237 TACCCGTACCTGGCTTACC 16255 | ||||| || || || || Sbjct 85544 TGCCCGTCCCCGGGTTGCC 85562 >seq2502 Length=269351 Score = 105 bits (116), Expect = 8e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 176018 GCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || ||||| || ||| |||||||||||||||||||| ||| || || ||||| Sbjct 88711 GCGTCCTTGCCTCCCTGCAGACGCGTACCAAACTGACCGTTGGGCAGCAGGAGGTTGATG 88770 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 ||||| || || | ||||| | ||||| |||| || ||| | ||| ||| ||||| Sbjct 88771 TTGTTGGAGCCGACGTAGTTCTGCGCCAGGTTGATGATGGTGGACATGAGCGAGGCTTCA 88830 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 ||||||||||||||| | ||| || || | | |||| |||||| || || |||||| Sbjct 88831 CCGTGGTGGTACGCAGAGTGCTCGGCCACGGAGCCAGCCAGCTGCGCGACCTTGATCTCA 88890 Query 176198 TCCTTG 176203 |||| Sbjct 88891 CGCTTG 88896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620672287145920