Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1514 104 3e-17 seq329 96.9 4e-15 seq2057 82.4 9e-11 >seq1514 Length=8380 Score = 104 bits (114), Expect = 3e-17 Identities = 286/435 (66%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACAC 106840 || || ||||||||||| || | || || ||||||| || |||| ||||| | | Sbjct 3775 TCTTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCA 3716 Query 106841 CGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTG 106899 || ||||| | ||| ||||| || | || | | | ||| | | ||| || || Sbjct 3715 CGCATTTCTTCTTTACCGTGGTT-TTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATG 3657 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGCCCAGCT---TGATTTACATA 106956 ||| ||||| | ||| | || | || ||||| || ||| || |||| |||||| Sbjct 3656 CCAAGGCTCCAAATATATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATA 3597 Query 106957 GCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT 107016 ||| || || | || ||||| || | |||||| || || || | ||| |||||||| Sbjct 3596 GCGAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGT 3537 Query 107017 CCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGC 107076 || ||| || | |||| || |||| ||| ||| | |||||||| || || Sbjct 3536 ACCTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGC 3477 Query 107077 CCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTC 107136 | | | ||| |||| ||||| | | | | || | || ||||| | |||||||| || Sbjct 3476 CGATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTC 3417 Query 107137 CTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 || ||| | | ||||| || | ||| || |||||||||| |||||||| | Sbjct 3416 TTTCATGGTTAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAA 3357 Query 107197 GGTTGGTGTTGCGTG 107211 || || || || || Sbjct 3356 TGTGGGAGTGGCATG 3342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 106267 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 ||| |||||| |||| || || || || ||||| | ||| || |||| ||| |||||||| Sbjct 4647 CAATATAAATGCATCGGCAAGGCCCTGTACACCTATACCTATTGGTCGGTGGCGCATATT 4588 Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 ||||| || || ||||| || ||| | ||| ||| || | | ||| |||||||| Sbjct 4587 CGACTTGCGAGCCTCTTCAACAGGGTAATAGTTTACGTCTATTATTTTGTTAAGATTTTT 4528 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 106428 ||||| || || | ||| |||||||||| || ||| Sbjct 4527 GGTAATTTGTTTGGTTACCTCACTTAGTTTTTCATGATTAAA 4486 >seq329 Length=129497 Score = 96.9 bits (106), Expect = 4e-15 Identities = 249/376 (66%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||||||||| || || || | | ||| ||| || ||||| ||||| || || Sbjct 85192 CGATCAAAGCGCCCCGGGCGCAACAAGGCGGGATCGAGAATATCCGGACGATTGGTTGCA 85251 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||||||| | || || | | | ||||||||||||||||| || | ||||| Sbjct 85252 GCGATGACGATGATCCCGGCGTGACCTTCAAAACCATCCATCTCAACCAGCATCTGGTTC 85311 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | || || || || || ||||| ||| | | || |||| ||| || || | Sbjct 85312 AGGGTCTGCTCGCGCTCGTCATTGCCGCCGCC--GAGGCCGGCACCGCGATGACGACCGA 85369 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCGGGCGATTTCAA 9426 | ||||| || || |||||||||| || || || || || | ||| | || | Sbjct 85370 CCGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTGCTTCT---TGGCATTCTCGA 85426 Query 9427 AGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9486 | | ||||| || | ||| ||||| ||||| ||||| || ||||||| | | ||| Sbjct 85427 ACATGTCGCGTACGCGCGCGGCACCCACGCCAACGAACATTTCAACAAAGTCGGAGCCGG 85486 Query 9487 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9546 || || ||| || || || | |||||| ||||| || || || || | ||| || | Sbjct 85487 AAATGCTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCCGCGCCAGCAAAGTTTTGC 85546 Query 9547 CCGTACCTGGCTTACC 9562 |||| || || || || Sbjct 85547 CCGTCCCCGGGTTGCC 85562 >seq2057 Length=842785 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || || | ||| |||| || || |||| ||||||||||| || | || || |||| Sbjct 609879 CTTGAAAGCTGGGGTCGAGGAGTGGCAGCGTTGAAGAGGGTAGGAGAAGCATGGGTGAAG 609938 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | || |||| | || ||| || || | ||| | |||||| || |||||||||||| Sbjct 609939 TAGCGTTCAGACAGCAAGTTGTAAGTATCGATGACTGCATCAATATCCTCCCCGTGGATG 609998 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGA 107321 || | || |||||||| ||||||| ||| || ||||| || Sbjct 609999 CCAACAGCAACACGCATCAACATGTGTTGAGGACGTTCCACGA 610041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589914161668640