Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq6036 731 0.0 seq1443 93.3 5e-14 >seq6036 Length=8020 Score = 731 bits (810), Expect = 0.0 Identities = 732/950 (77%), Gaps = 10/950 (1%) Strand=Plus/Plus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| | || |||||||||| || | | ||| | || || | || |||||||| Sbjct 69 AACCGTTTATACATCGGTTGGTTTGGTTGTTTAATGTTCCCTACATTATTAACAGCAACT 128 Query 179835 ATCTGCTTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 179894 || | |||| |||| |||||||| ||||| || || || |||||||| |||||||| Sbjct 129 TCTTGTTACATCATCGCATTCATCGCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAG 188 Query 179895 CCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 179954 || || || |||||| | | || ||||||||||||||||||||||||||| | ||| | Sbjct 189 CCAGTAGCAGGTTCATTATTATACGGTAACAACATCATCTCTGGTGCAGTTATCCCTAGT 248 Query 179955 TCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGG 180014 || ||||| || ||| | |||||||| || || |||||||| || || | || |||||| Sbjct 249 TCTAACGCTATCGGTATGCACTTCTACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGG 308 Query 180015 CTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCT-----GATTGGCATCT 180069 | || ||||||||||||| |||| | |||| | |||||| | || | |||||| Sbjct 309 TTATACAACGGTGGTCCTTACCAATTAATCGTTTGTCACTTCTTATTAGGAGTAGCATCT 368 Query 180070 ATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCT 180129 |||||||||||||| |||||| | ||||| || || |||||||| || ||||||| Sbjct 369 -----TACATGGGTCGTGAATGGGAATTATCTTACCGTTTAGGTATGCGTCCTTGGATCT 423 Query 180130 GCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCG 180189 |||||| | ||||||||||| || ||||| ||||| |||||| | || || || | | Sbjct 424 TCGTAGCTTTCTCTGCTCCAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATTG 483 Query 180190 GTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGC 180249 ||||||||||||||||||| | ||||| | || |||||||| || ||||||| |||| Sbjct 484 GTCAAGGTTCATTCTCTGATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGT 543 Query 180250 TTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAG 180309 | || |||||||| ||||||||||| | |||||||| ||||||||| || || || | Sbjct 544 TAGTATTCCAAGCTGAGCACAACATTTTAATGCACCCATTCCACATGGCTGGTGTTGCTG 603 Query 180310 GTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGG 180369 |||| || || ||||| | ||||| || |||||||||||| | || || ||||| | Sbjct 604 GTGTATTTGGTGGTTCTTTATTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAA 663 Query 180370 TTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAG 180429 |||||||||| ||||||| || || |||||||||||||| || ||||||||||||| Sbjct 664 TTCGTGAAACAACTGAAAGCGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAG 723 Query 180430 AGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCAT 180489 | || |||||||||||||| || || || |||||||||||| | |||||||| || || | Sbjct 724 AAACTTACAACATCGTTGCAGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTT 783 Query 180490 CGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCT 180549 | ||||||||||| ||| | | ||||||||| | || |||||| || | || |||| Sbjct 784 CATTCAACAACTCTCGTGCTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCT 843 Query 180550 GGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACC 180609 |||| ||||| |||| | || || ||||| |||||| | ||||||||||||||||||| Sbjct 844 GGTTAACTGCTATGGGTATTAGTACTATGGCGTTCAACTTAAACGGTTTCAACTTCAACC 903 Query 180610 AGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCG 180669 | || | | ||| ||||||||||| ||||||||||||| || | | ||||| | Sbjct 904 AATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACTTGGGCTGATATCGTTAACCGTG 963 Query 180670 CTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCA 180719 ||| | | ||||||||||| |||||||| ||||| || |||||||||||| Sbjct 964 CTGATTTAGGTATGGAAGTAATGCACGAACGTAACGCGCACAACTTCCCA 1013 >seq1443 Length=15309 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 141684 GTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCTCCGTGG 141743 |||| |||| |||||| ||||| ||||||||||||| ||| ||||||||| || |||||| Sbjct 12917 GTGGCCGAGCGGTTTAAGGCACCGGTCTTGAAAACCGGCGTGGGTGCAAGCTCACCGTGG 12858 Query 141744 GTTCAAATCCCACC 141757 |||| ||||||||| Sbjct 12857 GTTCGAATCCCACC 12844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610327855681440