Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq6036 758 0.0 seq1863 163 3e-35 >seq6036 Length=8020 Score = 758 bits (840), Expect = 0.0 Identities = 761/980 (78%), Gaps = 6/980 (1%) Strand=Plus/Plus Query 169444 GGTTGGTTTGGTGTTCTAATGATTCCATGC-TTACTCACAGCAGCAGCATGTTTCATCGT 169502 |||||||||||| | ||||| |||| | | ||| | |||||| | | |||| |||| | Sbjct 84 GGTTGGTTTGGTTGTTTAATG-TTCCCTACATTATTAACAGCAACTTCTTGTTACATCAT 142 Query 169503 TGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTC 169562 |||||||| ||||| ||||| || |||||||| || ||| | || |||||||| ||||| Sbjct 143 CGCATTCATCGCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTC 202 Query 169563 TTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGG 169622 || || || ||||||||||||||||||||||||||| | || || ||||||||||| Sbjct 203 ATTATTATACGGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGG 262 Query 169623 ACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGG 169682 | |||||||||||||| ||||||||||| | | ||||| ||||| || || ||||| Sbjct 263 TATGCACTTCTACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGG 322 Query 169683 TCCTTATCAGTTGGTAATCTTCCACTTCCTTATT-GGTATCTCAGCATACATGGGAAGAC 169741 |||||| || || | | | ||||| |||||| || | || | |||||||| | Sbjct 323 TCCTTACCAATTAATCGTTTGTCACTT-CTTATTAGGAGTAGCATCTTACATGGGTCGTG 381 Query 169742 AGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 169801 | |||||| |||| ||| | ||||| |||||||||||||||| || || | |||||| | Sbjct 382 AATGGGAATTATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTC 441 Query 169802 CAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCTG 169861 ||||| | || || | || |||||||||||||||||| ||||||| ||||||||||||| Sbjct 442 CAGTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTG 501 Query 169862 ATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAGC 169921 |||||||||| ||||||| || |||||||||||||| ||||| || |||||||| |||| Sbjct 502 ATGGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGC 561 Query 169922 ATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCTT 169981 | |||||| ||||||| || ||||||||||| || || || || | || || || |||| Sbjct 562 ACAACATTTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTT 621 Query 169982 TATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAGC 170041 |||||||||| ||||| |||||| | || ||||| ||| |||| | |||||||| || Sbjct 622 TATTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAA 681 Query 170042 AAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAG 170101 || ||| ||||| ||||| || ||||| |||||||||||||| |||||||| || | Sbjct 682 GCGAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTG 741 Query 170102 CAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAA 170161 |||| ||||||||||| |||||| | |||||||| || ||||||||||||||||| | Sbjct 742 CAGCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTG 801 Query 170162 GTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTA 170221 | ||||||||||| |||| | | || ||| || || | |||||||| ||||||||| Sbjct 802 CTTTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTA 861 Query 170222 TCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCTA 170281 | | || ||||| |||||||| || ||||||||||| |||||||||||||| ||| | Sbjct 862 TTAGTACTATGGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCAC 921 Query 170282 ACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAAG 170341 | || | || || |||| |||| | | ||| | || | || |||||||||| Sbjct 922 AAGGTCGTGTAATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGGAAG 981 Query 170342 TTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTG-AGTCTACA 170400 | ||||| ||| | || || |||||||||||| |||| |||| || | || ||| | | Sbjct 982 TAATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGAAGTAT-TA 1040 Query 170401 CAGGTTGCTTTAACAGCACC 170420 | |||||||||||||| || Sbjct 1041 CCAGTTGCTTTAACAGCTCC 1060 >seq1863 Length=6263 Score = 163 bits (180), Expect = 3e-35 Identities = 392/579 (68%), Gaps = 18/579 (3%) Strand=Plus/Minus Query 154557 GGTTATCAGAAAATTATAGATGACTTA-CAGAAATGGTTATGTGATATCACAGGGTTTGA 154615 |||||| | |||||||||| | ||| ||| ||| | | ||| || || || ||||| Sbjct 6170 GGTTATAAAGAAATTATAGAAAATTTATCAGCT-TGGCTTTCTGAAATTACTGGCTTTGA 6112 Query 154616 TTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAAT 154675 | | | ||||| || ||| ||||| |||| || ||||| ||||| || | | || Sbjct 6111 TGCGGTTAGTTTACAGCCAAACTCAGGAGCACAAGGCGAGTACGCAGGCTTGCTTGTGAT 6052 Query 154676 CCAAGCATACCATCAAGGATCA---GGAGATGATAAAAGAAATGTATGTTTGATACCAGA 154732 || |||||| | ||| |||||| | |||||| | || ||||| Sbjct 6051 TAGGGCTTACCAT---GCCTCACGGGGAGATTTGCATAGAAATATTGCCTTAATACCGTC 5995 Query 154733 GTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGT 154792 ||| |||||||| || ||||||||| || || ||||| || |||||||| || ||| Sbjct 5994 GTCGGCACATGGTACAAATCCTGCTTCGGCGGTGATGGCTGGCATGAAAGTGGT-GGTAA 5936 Query 154793 CAAG-TGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGA 154851 ||| |||||||| |||| || || || | ||| | ||||| || || Sbjct 5935 CAAAATGTGATGAAAATGGCAATATTGATGTGGCTGATTTGCGTGCCAAAGCTATG--GA 5878 Query 154852 ATACATTTGAACTGT--CATGTATTATGATTACATACCCATCTACACATGGTGTATTTGA 154909 | | | || | | | ||| | ||| |||| || || || || ||||| || ||||| Sbjct 5877 ACATGCTGCAAATTTATCCTGTTTAATGGTTACTTATCCTTCCACCCATGGCGTTTTTGA 5818 Query 154910 A-ACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTG 154968 | | | | |||| | || ||| | | ||||||| |||||||| || || ||| | | Sbjct 5817 AGAATCA-ATTATTGAAATTTGTGAATTAATTCATGAAAATGGTGGCCAAGTTTATATGG 5759 Query 154969 ATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGAT 155027 ||||||| ||| | ||||| || || || | | |||| | | ||| || || ||| Sbjct 5758 ATGGAGCCAATATGAATGCCCAAGTTGGGTTGACTTCACCA-GCCAATATTGGGGCGGAT 5700 Query 155028 GTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGC 155087 || || ||| | || || || ||||| ||||||||||| |||||||| || || ||||| Sbjct 5699 GTTTGCCATTTGAATTTGCACAAAACCTTCTGTATTCCTCATGGAGGCGGCGGCCCTGGT 5640 Query 155088 GTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 || || || || ||||| || || ||| | || |||||| Sbjct 5639 GTTGGCCCGATTGGTGTTGCCAAGCATTTAACGCCATTT 5601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579147377914240