Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6036 729 0.0 seq1863 179 4e-40 >seq6036 Length=8020 Score = 729 bits (808), Expect = 0.0 Identities = 750/978 (77%), Gaps = 2/978 (0%) Strand=Plus/Plus Query 171862 GGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTT 171921 |||||||| ||| | ||| |||| || | |||||| | | || | |||| | Sbjct 84 GGTTGGTTTGGTTGTTTAATGTTCCCTACATTATTAACAGCAACTTCTTGTTACATCATC 143 Query 171922 GCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT 171981 |||||||| ||||| ||||| || |||||||| || ||| | || ||||| || ||||| Sbjct 144 GCATTCATCGCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTCA 203 Query 171982 TTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGT 172041 || ||||| ||||||||||||||||||||||||||| | || || ||||| || ||| Sbjct 204 TTATTATACGGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGGT 263 Query 172042 CTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGT 172101 | ||||||||||| || ||||||||||| | | ||||| ||||| ||||| |||||| Sbjct 264 ATGCACTTCTACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGGT 323 Query 172102 CCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAG 172161 ||||| || || | | | |||||| | | || | || | |||||||| | | Sbjct 324 CCTTACCAATTAATCGTTTGTCACTTCTTATTAGGAGTAGCATCTTACATGGGTCGTGAA 383 Query 172162 TGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCT 172221 |||||| |||| ||| | ||||||||| | || ||||| | ||||| | || || || Sbjct 384 TGGGAATTATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTCCA 443 Query 172222 GTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGAT 172281 ||| ||||||| | ||| || ||| | || || ||| | ||||| ||||||||||||||| Sbjct 444 GTAGCAGCAGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTGAT 503 Query 172282 GGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCAT 172341 |||||||| ||||||| || ||||| |||||||| ||||| || |||||||| ||||| Sbjct 504 GGTATGCCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGCAC 563 Query 172342 AACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTA 172401 |||||| ||||||| || ||||||||||| || || || || | ||||| || |||||| Sbjct 564 AACATTTTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTTTA 623 Query 172402 TTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCA 172461 |||||||| ||||||||||| ||||| || |||||| |||| | || ||||||||| Sbjct 624 TTCTCAGCTATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAGC 683 Query 172462 GAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCA 172521 |||||| |||||||| ||||| ||||| |||||||||||||| |||||||| || ||| Sbjct 684 GAATCAACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 743 Query 172522 GCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGT 172581 || ||||||||||| |||||| | |||||||| || ||||| ||||||||||| | | Sbjct 744 GCTCACGGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTGCT 803 Query 172582 CTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATC 172641 | ||||||||| |||| | | || ||| || || | |||||||| |||||||||| Sbjct 804 TTACACTTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTATT 863 Query 172642 TGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAAC 172701 |||| ||||| |||||| | ||||||||||||||||||||||||||||||||| | | Sbjct 864 AGTACTATGGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 923 Query 172702 GGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTT 172761 ||| | | || |||| ||| | ||||| | || | ||||||||||||| Sbjct 924 GGTCGTGTAATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGGAAGTA 983 Query 172762 ATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCTGCAG-AGTCTTCAAC 172820 ||||| ||| | || || ||||||||||||||||| | ||||| | | ||| || | | Sbjct 984 ATGCACGAACGTAACGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGAAGTATT-ACC 1042 Query 172821 AGTTGCTTTAACAGCACC 172838 ||||||||||||||| || Sbjct 1043 AGTTGCTTTAACAGCTCC 1060 >seq1863 Length=6263 Score = 179 bits (198), Expect = 4e-40 Identities = 449/671 (67%), Gaps = 16/671 (2%) Strand=Plus/Minus Query 159139 ACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCTAAC 159198 || |||||||| || ||| | | ||| |||| ||||| | ||| || ||| | Sbjct 6263 ACCATGAAACTGAATGCAACTACCGAAATGATACCTGTTACTTGGCCTGAAATTGGCGGC 6204 Query 159199 GTGCATCCACATACACCTATGATACAGACCATGGGTTATCAAAAAATTATAGATGACTTA 159258 | ||||| | |||| | ||| || |||||| || |||||||||| | ||| Sbjct 6203 CTTCATCCGTTTGCACCAAGCTCACAAACAGCTGGTTATAAAGAAATTATAGAAAATTTA 6144 Query 159259 -CAGAAATGGTTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGG 159317 ||| ||| | | ||| || || || |||||| | | ||||| || ||| |||| Sbjct 6143 TCAGCT-TGGCTTTCTGAAATTACTGGCTTTGATGCGGTTAGTTTACAGCCAAACTCAGG 6085 Query 159318 ATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCA---GG 159374 | |||| || ||||| ||||| || | | || || |||||| | ||| || Sbjct 6084 AGCACAAGGCGAGTACGCAGGCTTGCTTGTGATTAGGGCTTACCAT---GCCTCACGGGG 6028 Query 159375 AGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATC 159434 |||| | |||||| | || ||||| ||| |||||||| || |||||||| || Sbjct 6027 AGATTTGCATAGAAATATTGCCTTAATACCGTCGTCGGCACATGGTACAAATCCTGCTTC 5968 Query 159435 AGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAG-TGTGATGATGATGGCAACATAG 159493 || |||||||| || |||||||| || ||| ||| |||||||| ||||||| || | Sbjct 5967 GGCGGTGATGGCTGGCATGAAAGTGGT-GGTAACAAAATGTGATGAAAATGGCAATATTG 5909 Query 159494 ACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGT--CATGTATTAT 159551 | | ||| | ||||| || ||| | | || | | | ||| | || Sbjct 5908 ATGTGGCTGATTTGCGTGCCAAAGCTATG--GAACATGCTGCAAATTTATCCTGTTTAAT 5851 Query 159552 GATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGAT 159611 | |||| ||||| || || ||||| || |||||| | || | | || ||| | | Sbjct 5850 GGTTACTTATCCTTCCACCCATGGCGTTTTTGAAGAATCAATTATTGAAATTTGTGAATT 5791 Query 159612 TGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGG 159671 ||||||| |||||||| || || ||| | ||||| || ||| | ||||| || || || Sbjct 5790 AATTCATGAAAATGGTGGCCAAGTTTATATGGATGGAGCCAATATGAATGCCCAAGTTGG 5731 Query 159672 TCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAACTTACATAAGACAT 159730 | | |||| | | ||| || || ||||| || ||| | || || || || || | Sbjct 5730 GTTGACTTCACCA-GCCAATATTGGGGCGGATGTTTGCCATTTGAATTTGCACAAAACCT 5672 Query 159731 TCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATC 159790 |||||||||| |||||||| || || ||||| || || || |||||||| || || ||| Sbjct 5671 TCTGTATTCCTCATGGAGGCGGCGGCCCTGGTGTTGGCCCGATTGGTGTTGCCAAGCATT 5612 Query 159791 TCACACCATTT 159801 | || |||||| Sbjct 5611 TAACGCCATTT 5601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587984779616960