Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3957 122 2e-22 seq1112 114 3e-20 seq2446 96.9 8e-15 >seq3957 Length=668572 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| ||||| ||||| || | | || | ||||| || ||||| || || ||||||| Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGA 478817 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | ||||| || || || || |||||||| ||||||||||| || || ||| || || | Sbjct 478816 TCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTAT 478757 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || ||||| ||| || || || | ||| | ||||| ||||| || |||||||||| Sbjct 478756 CGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACGA 478697 Query 195131 ACACTTGCATTT 195142 | | ||||||| Sbjct 478696 AGATCTGCATTT 478685 >seq1112 Length=3255245 Score = 114 bits (126), Expect = 3e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | ||| | |||||| || || || || ||||||||||| |||| ||| || Sbjct 2620690 TCTCAGTCTGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAGTCGGAAAGGGT 2620749 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| ||||||||||| | || || |||||||| || || || Sbjct 2620750 GCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 2620809 Query 195039 TTCTTTGTCTTGAATTTT 195056 ||| ||||| || ||||| Sbjct 2620810 TTCCTTGTCCTGGATTTT 2620827 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||| | ||| | |||||| ||||| || || ||||||||||| || | || || Sbjct 2622947 TCTCAGTCTGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAGAGTGT 2623006 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || |||||||| ||||||||||| | || || |||||||| || || || Sbjct 2623007 GCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATTCC 2623066 Query 195039 TTCTTTGTCTTGAATTTT 195056 ||| ||||| || ||||| Sbjct 2623067 TTCCTTGTCCTGGATTTT 2623084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| || || || | || || | |||||| || |||||||| ||||||||||| Sbjct 2620093 TTCTGAATGTTATAGTCTGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCTGCGAAGATC 2620152 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 2620153 AAGCGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620196 >seq2446 Length=1160753 Score = 96.9 bits (106), Expect = 8e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| || || ||||| ||||| || ||||| | || || | ||||| ||| Sbjct 439670 ACAAGGTGAAGGGTCGATTCTTTCTGAATGTTATAATCTGAGAGTGTGCGGCCATCCTCG 439611 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 |||||||| || || || || || ||||||||||| || ||||||||| Sbjct 439610 AGCTGCTTGCCAGCAAAAATCAGCCGTTGTTGGTCAGGGGGAATGCCT 439563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109353151154612