Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1514 232 8e-56 seq1813 123 3e-23 seq2057 86.0 7e-12 >seq1514 Length=8380 Score = 232 bits (256), Expect = 8e-56 Identities = 650/994 (65%), Gaps = 14/994 (1%) Strand=Plus/Minus Query 47904 GCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATA 47963 ||||| || | ||| |||||||| |||||||||| ||| || || | ||| || Sbjct 4069 GCTACTTCGTCAGGAGCAGTATATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATG 4010 Query 47964 GTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGT 48023 || || | |||| || ||| | ||| ||| || || | ||||| | ||| Sbjct 4009 GTGCCAAGGTTTTTTTGGTTACTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGT 3950 Query 48024 GTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA---GTCCTAGCCTTTATA 48080 || |||||||| || || ||| | | ||||| || || ||| | | |||| Sbjct 3949 GTGCCAGTTTCCATTTGGCTTTCCA----ATATTTCAAACCATAAGTCTTGGGCTTTT-- 3896 Query 48081 ACAGCTCTAG---CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 || | | || |||| || |||||| || || | || |||||| | || Sbjct 3895 ACCGTTTTACGTACTTTTCCTTCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCG 3836 Query 48138 CCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCA 48197 ||||| || | || || || ||||| || || ||||| | |||||| | || | | Sbjct 3835 CCATAGCAATCGGCCAAGCCTGGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTA 3776 Query 48198 TTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTT 48257 | || || | ||||||||| ||| |||||||| | || ||| | ||| | || Sbjct 3775 TCTTCCACCCGCTTCATAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCA 3716 Query 48258 CTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGC 48317 | | |||||| || || || | || | || | || || | | ||| |||||| Sbjct 3715 CGCATTTCTTCTTTACCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGC 3656 Query 48318 CATGGTTCTAAATATATTGCCATT-ACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 || || || |||||||| || | | | ||| | || || |||||| ||||||| ||| Sbjct 3655 CAAGGCTCCAAATATATGGCAAATGAGCCCTTG-CGCTTGCCACCTCCCTGATCTACATA 3597 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | || |||| || | || | |||||||| | || || ||||| | ||||| || Sbjct 3596 GCGAGCGGTATCATTGAATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGT 3537 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || ||||| ||| | || |||| |||| || | || |||||||| || Sbjct 3536 ACCTTTTATATACGAACCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGC 3477 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 | || |||||| ||||| | || | ||||| ||||| || ||||| || || Sbjct 3476 CGATTGTGATATTTTGGCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTC 3417 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 | |||| |||||| ||| || || | || || | || |||| ||| ||||| Sbjct 3416 TTTCATGGTTAATAAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAA 3357 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 ||| |||| ||||| |||||||| |||||| | || ||||| |||||||| | || Sbjct 3356 TGTGGGAGTGGCATGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGA 3297 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| ||| ||||||| || ||||||||| | ||||| || || | ||| Sbjct 3296 GTCGATATCTATACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTC 3237 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | || || || ||||| ||||||||||||||||| | ||||||||| |||||||| Sbjct 3236 TGCTATATTTCCATCAATTTTTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATA 3177 Query 48797 GTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTTATA 48856 | || ||| || |||||| || || | || | | | | |||||| | Sbjct 3176 ATCATAACCAAAATCTCTATCATATATTATAGTAGAGTCGAGCAATGCAGCATGTTTTTT 3117 Query 48857 TACTACATCCATTACATTTTTTGATATAATTGAT 48890 ||| ||||| ||| | |||||| |||| |||| Sbjct 3116 TACAACATCATATACTTCTTTTGAAATAAGTGAT 3083 >seq1813 Length=735787 Score = 123 bits (136), Expect = 3e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 |||||| ||||| | ||||||||||||||| | || |||| |||||| || | |||| Sbjct 440283 TCATTACTGAATGTCAGACCAGGCATCAGTCCACGCTTCTTTAGCCAGAAAATGGCAGCA 440224 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || ||| || ||||| || || || ||||||||||| || || | || ||| ||||| Sbjct 440223 AAGCTTCCTGAGAAGAAGATGCCCTCGACTGCTGCAAACGCCACGACTCGTTCACCATAG 440164 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGC 19182 | ||| || || |||||| | ||| ||||| || |||||| | || ||||| ||| Sbjct 440163 GTGGCAGAATCATGCGAAATCCAGTCCAGAGCCCAGTCTGCCTTCCTCTTCACACACGGC 440104 Query 19183 ATTGTCTCTAT 19193 || ||||| || Sbjct 440103 ATGGTCTCAAT 440093 >seq2057 Length=842785 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || |||| ||||| |||| ||| ||| | || || | ||||||||||| Sbjct 605918 TCCAGGCAAAGAAGTGCATGGACGTTAGTTTTCCATAGTTTGGCTCAGCAATATGAATAT 605977 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||| ||||| || ||||| | || |||| |||||||||||| |||| ||| | Sbjct 605978 TCAGACTCTGACTTTGGTCAATGTAAGCTCCTCGATCAGCTGCCATCTCTATGATACGCT 606037 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 | || | ||||||||| || || || |||| || ||| Sbjct 606038 TCTGAGATATCTCCCACACAGTCTTGTAAAGTTCTTT 606074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||| || || | ||| | || || ||||| || || | || ||| || || Sbjct 609597 TTATTTCCTCCCTGGTCCACATAACGAGCCGTGTTGTTGTACACACGTAGCATAGGTACC 609656 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTAC 48471 | ||||| | ||| || || |||| ||| ||| |||| ||||| || | | Sbjct 609657 AATCCATTGCTGACACCGTTAGTGCCCGCAATGTAAGATCCAGCAGCTCGGATGCAGTGT 609716 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 |||| | || || ||||| || || || ||||| |||||| |||| ||||||| Sbjct 609717 ACGTTGACA--CCAATGCCACCAGCAGACTTGGAGATTAGTGCACACTGTTTGAGGGTAT 609774 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 |||| ||||| || || || ||||| |||| | | || |||||||| Sbjct 609775 CATAGATTCCCTCAATGCTGTCATCCTTCATTGTCAGCAGGAAACAACT 609823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562045309811040