Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq224 140 3e-27 seq8012 98.7 8e-15 seq4868 95.1 1e-13 seq3890 93.3 3e-13 seq429 89.7 4e-12 >seq224 Length=2126973 Score = 140 bits (154), Expect = 3e-27 Identities = 446/687 (65%), Gaps = 6/687 (1%) Strand=Plus/Minus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACC 551960 |||||||| | || || ||||| ||||| ||||| | | || | || | || || Sbjct 1751666 CGTCGTCTTCGTACAGCATGCGAGAGAGCGAAACGCACGTTATCCAGTAGTTCCGAAGCC 1751607 Query 551961 ACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCC 552020 | ||||||| | ||| |||| | || || | |||| | |||| ||||| | || Sbjct 1751606 AGTATTGAAATCGATGCATTGTACGAAGGGGTGGATTTTTATACCAAGATTTCACGTGCT 1751547 Query 552021 AAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTT 552080 || || || ||||| || || | || || ||| | | ||| || ||||| | | Sbjct 1751546 CGCTTCGAGGAACTTTGTGCTAATTTATTCCGAGCAACTCTGGTACCGGTGGAACATGCT 1751487 Query 552081 TTAAGAGATTCAAAGATTGATAAA--TCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | || | || || || ||| | ||| | || || |||| || || || || | Sbjct 1751486 CTCGCTGACGCTAAAATGGACAAAGGTTCAA--TTCACGATGTTGTCCTCGTCGGAGGTT 1751429 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAAATTAA 552198 | || | || |||||||| | || | || | |||||| || ||| || | Sbjct 1751428 CCACTCGCATCCCTAAAATCCAAAAATTACTACAAGGATTTTTCAACGGCAAACCTTTGA 1751369 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | || || || |||||||| || |||||||| ||| | |||||||| || | Sbjct 1751368 ATCTGTCCATCAACCCTGACGAGGCTGTGGCTTATGGTGCTGCAGTGCAAGCAGCCATCC 1751309 Query 552259 TTTCTGGACAAACT-GATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTA 552317 | ||| | || | | ||| | ||| | | |||| || || || | ||||| Sbjct 1751308 TGAGTGGTGACACGAGCAGTCAAA-TCCAAGACGTGCTACTGGTGGACGTGGCACCTCTC 1751250 Query 552318 TCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACT 552377 || || ||| | ||||| | | ||| | ||||| || | ||||| | || || | Sbjct 1751249 TCACTCGGTATCGAAACTGCGGAAGGCGTCATGACCAAGATCATCGAGCGTAACGCTCAT 1751190 Query 552378 ATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACA 552437 || || || | |||| | || ||| || ||||| ||| ||| ||| || Sbjct 1751189 ATCCCATGCAGAAAACAACAAACGTTCAGTACTTACGAGGATAACCAACCTGGTGTCACC 1751130 Query 552438 ATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT 552497 |||||| | |||||||||||| || | ||||| || || ||| ||| || |||||| Sbjct 1751129 ATTCAAGTATTTGAAGGAGAACGATTTATGACTAAGGACAACAATTTACTCGGAACTTTT 1751070 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | | || ||||| | ||| ||||||||||| || |||||||||| || || ||| Sbjct 1751069 GACCTTTCTGGAATTCCACATGCACCTCGTGGAGTCCCAAAAATTGAAGTCACGTTTGAT 1751010 Query 552558 ATCGATGCCAATGGAATTTTGAATGTG 552584 || || ||||||||||| ||||| ||| Sbjct 1751009 ATGGACGCCAATGGAATCTTGAACGTG 1750983 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || ||||| || || || || || || |||||| | |||||||| || || || || Sbjct 1752029 GACGCCGTAATCACGGTGCCCGCTTACTTCAATGACGCTCAACGTCAGGCCACCAAGGAC 1751970 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 || || ||||| ||||| || || | ||||| ||||||||||| || ||||| ||| Sbjct 1751969 GCGGGGGCCATTGCAGGACTGAACGTAATACGTATCATCAATGAACCCACAGCTGCCGCA 1751910 Query 550517 CTTGCATATGGACTTGATAAA 550537 || || || || || || ||| Sbjct 1751909 CTCGCTTACGGCCTCGACAAA 1751889 >seq8012 Length=288746 Score = 98.7 bits (108), Expect = 8e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 || || ||||| ||||| || ||||| | | || ||||| | || || || Sbjct 11257 TTCTCGCCAGAGGAAATTAGCTCGATGGTGCTGACAAAGATGAAGGAGACTGCTGAAGCG 11198 Query 550376 TTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTC 550434 | | | ||| |||| ||| ||| | || ||||| || || || || || ||||| ||||| Sbjct 11197 TATCTCGGT-AAGACAGTGACGAACGCTGTAATCACGGTGCCCGCTTACTTTAACGACTC 11139 Query 550435 ACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTAT 550494 ||||||||||| || |||||||| ||| || | | ||||| ||||| || ||||| Sbjct 11138 GCAACGTCAAGCCACCAAAGATGCAGGAGTGATCTCCGCCCTTAACGTTCTCCGCATTAT 11079 Query 550495 CAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 ||| ||||| || || ||||| | || || || || || ||| Sbjct 11078 CAACGAACCCACCGCCGCTGCTATCGCTTACGGCCTCGACAAA 11036 >seq4868 Length=209799 Score = 95.1 bits (104), Expect = 1e-13 Identities = 332/512 (65%), Gaps = 6/512 (1%) Strand=Plus/Plus Query 552117 GAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT 552176 || || |||||||| || ||||| || | ||||| ||||||| || | ||| Sbjct 205729 GACATCGTGCTTGTCGGAGGATCAACCCGCATTCCAAAAATTCAGCAACTTCTAAAAGAA 205788 Query 552177 TATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGT 552236 | |||||||||||| || | || || | | || || |||||| |||| || || || Sbjct 205789 TTTTTCAATGGTAAGGAACTGAACAAATCTATAAACCCGGATGAGTCTGTGGCTTACGGA 205848 Query 552237 GCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTA 552296 || || || || || ||||| || | | ||| | | ||| | || || Sbjct 205849 GCGGCTGTTTTGGCTGCCATTCTCAGAGGCGATAAGTCTGAGGTAGTTCAAGACATGCTA 205908 Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAAT 552356 ||| | || || ||||| | || |||| | ||||| | || || | |||||| Sbjct 205909 CTTCTCGACGTCACTCCCATGTCGTTTGGAATTGAAACTGCCGGTGGGGTGATGACTGCC 205968 Query 552357 CTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCA 552416 || ||| | | ||||| || ||||| |||| | || | || | || || || Sbjct 205969 CTGATCAAGCGTAATACCACCATTCCAACTAAACAGACTAGGACCTTCACCACATACTCG 206028 Query 552417 GATAATCAAAC-TGCTGTTAC-AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAG 552474 || || ||| | ||| |||| ||||| | | || |||||| || | || |||| Sbjct 206029 GACAACCAATCTTGC--TTACTCATTCAGGTGTACGAGGGAGAACGAGCCATGACAAAAG 206086 Query 552475 ATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTAC 552534 | ||||| | || || | |||| | || || |||||||| ||| | || | Sbjct 206087 ACAATAAGCTGCTGGGAAAGTTTATGCTGACTGGAATACCTCCTGCCCCTAGAGGTACGC 206146 Query 552535 CGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTG 552594 |||| |||| || || ||||| || |||||||| | || |||| |||||||||| | Sbjct 206147 CGCAGTTTGAGGTGACCTTCGACATTGATGCCAACAGCATCTTGATTGTGACTGCTGTGG 206206 Query 552595 ATAAATCTAGCAACAAGAGTAAA-AATATTAC 552625 | || || | |||||| || ||| || ||||| Sbjct 206207 AGAAGTCGACCAACAA-AGAAAAGAAAATTAC 206237 >seq3890 Length=880544 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 549996 TAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTG 550055 |||| || || || || |||||||| |||||| || || | || | || || || | Sbjct 736879 TAGGAATTGACTTGGGCACCACATACTCTTGTGTGGGAGTCTTCCAGCACGGCAAGGTCG 736820 Query 550056 AAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAA 550115 |||||||||||||||| ||||| ||| | || || || ||||||| | ||||| || | Sbjct 736819 AAATTATTGCCAATGACCAAGGAAACCGTACAACGCCTAGTTATGTTGCCTTCACAGACA 736760 Query 550116 CTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 | || | | | |||| ||||| ||||| |||||| Sbjct 736759 CAGAGCGTCTCATTGGAGATGCTGCAAAGAATCAAG 736724 >seq429 Length=23842 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || || || ||||| || ||||| || || ||||||||||| || ||||| || || || Sbjct 6117 GTAACAGAAGCAGTTATCACTGTGCCTGCTTATTTTAATGATTCCCAACGCCAGGCCACG 6176 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||| || ||||| || || ||| | || ||||| ||||| || || || || Sbjct 6177 AAAGATGCCGGGCGTATCGCAGGCCTTGAGGTAAAGCGTATCATCAACGAGCCAACAGCC 6236 Query 550511 GCTGCACTTGCATATGG 550527 || | ||||| ||||| Sbjct 6237 GCCTCGCTTGCCTATGG 6253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028818135567640