Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq450 161 3e-35 seq6557 129 2e-25 seq2001 91.5 5e-14 >seq450 Length=27002 Score = 161 bits (178), Expect = 3e-35 Identities = 236/327 (72%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 21195 TGAGCCTGCTGGTGGTGGACTACCTGCAGCTGCTGGAGAGCTCCGGCAAGTCC-----AC 21249 || ||||| ||||||| ||||||||||| ||| || |||| ||| | | | Sbjct 21532 TGGGCCTGGTGGTGGTTGACTACCTGCAACTGATGAGCGGCTCGAGCACGAACGAGGAAA 21473 Query 21250 TCGCACCGAGGACG-TCAGCGACATGTCCCGCCAG-TGCAAGCTGCTGGCGATGGAGCTT 21307 | ||| |||| || |||| || || ||| | || || | |||||| | ||| || Sbjct 21472 ACCGGGCGACGACGATCGGCGAAATCTCGCGCGGGCTGAAATC-GCTGGCCAAGGAA-TT 21415 Query 21308 GGTATCCCCG-TGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAA 21366 | || ||| |||| | ||||||| | |||||||| ||||| |||||| |||| Sbjct 21414 GCAATGTCCGGTGATTGCCTTGTCGCAATTGAACCGCTCGGTGGAGACGCGGCCCGACAA 21355 Query 21367 GCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGAT 21426 ||| ||||||||| |||||||| || || || || ||||| ||||| ||||| ||||| Sbjct 21354 GCGCCCGATGATGAGTGACCTGCGGGAATCGGGCGCCATCGAACAGGATGCCGACGTGAT 21295 Query 21427 CATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGA 21486 ||||||| | |||||||||||| |||| || ||| | || | | ||||||||||| Sbjct 21294 CATGTTCATCTACCGCGACGAGTACTACAACAAGGACTCGAAGGAGCCGGGCGTGGCTGA 21235 Query 21487 GTTGATCATCGCGAAGCACCGCAACGG 21513 | | ||||||| ||||| |||||||| Sbjct 21234 GATCATCATCGGCAAGCAGCGCAACGG 21208 >seq6557 Length=877522 Score = 129 bits (142), Expect = 2e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 21363 ACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATG 21422 ||||||| ||||||||||| ||||||||||| ||||| || || |||||||| || || | Sbjct 46166 ACAAGCGTCCGATGATGTCCGACCTGCGCGAATCCGGCGCCATTGAGCAGGATGCAGACG 46225 Query 21423 TGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGG 21482 | || || | |||||||||| || |||| | || ||||| | || ||| | | Sbjct 46226 TTATTTTGATGATGTACCGCGAGGAATACTACAAGCCCGATACGCCCGACAAGGGCATCG 46285 Query 21483 CTGAGTTGATCATCGCGAAGCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCC 21542 | || |||| |||| ||||| || |||||| | | |||||||||| || |||| Sbjct 46286 CCGAAGTGATTATCGGCAAGCAGCGTAACGGCCCGACCGGCACTGTTCGCCTAGCCTTCC 46345 Query 21543 TGGGTAAGTACTCGCGATTCGAGCAGCTCGC 21573 | ||| ||||| |||| ||||| | ||||| Sbjct 46346 TCGGTGAGTACACGCGCTTCGACAATCTCGC 46376 >seq2001 Length=3286380 Score = 91.5 bits (100), Expect = 5e-14 Identities = 171/252 (68%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 21268 CGACATGTCCCGCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCT 21327 |||||| ||||| | |||| |||||||| || || | | || ||| | | ||| Sbjct 1539049 CGACATCTCCCGGTCGCTCAAGGCGCTGGCGAAAGAACTGAATGTGCCGGTGGTGGCGCT 1539108 Query 21328 GTCGCAGCTCAACCGCTCCCTGGAGC------AGCGGCCGAACAAGCGACCGATGATGTC 21381 |||||||||| ||| | | ||| ||| ||||| | || ||| || | Sbjct 1539109 CTCGCAGCTCAGCCGGGCTGTCGAGGCGAGAAAGCCGCCGATC------CCCATGCTGGC 1539162 Query 21382 GGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCG 21441 ||| |||| || ||||| |||||||||||||||||||| ||| ||||||| | || || Sbjct 1539163 CGACTTGCGTGAATCCGGCGCGATCGAGCAGGACGCCGACGTGGTCATGTTTATCTATCG 1539222 Query 21442 CGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAA 21501 ||| || ||||| ||| | | | || ||| | |||||| | |||||| || Sbjct 1539223 CGAAGATGTCTATGACCAGAACTCTGAGCGAAAAGGCATTGCTGAGATTATCATCAGCAA 1539282 Query 21502 GCACCGCAACGG 21513 ||| || ||||| Sbjct 1539283 GCATCGAAACGG 1539294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157093541661304