Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1224 150 1e-31 seq112 89.7 4e-13 >seq1224 Length=1352561 Score = 150 bits (166), Expect = 1e-31 Identities = 246/351 (70%), Gaps = 5/351 (1%) Strand=Plus/Plus Query 29866 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29925 || ||||| |||| ||| || | |||||| ||||| ||||||||||| || ||||| || Sbjct 1087475 TCGAGCCCAGTGATGTGTGCAAGCATGTATGTGAGCAGAGAGTAGCTAGCAATGTTGAAC 1087534 Query 29926 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG--- 29982 || |||||||| |||||||| | || | |||||| | |||||||||||| | | | Sbjct 1087535 GGCACCCCGAGGCCCATGTCTGCTGAACGCTGGTACATCTGACACGAGAGATAGCGGCGC 1087594 Query 29983 TCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||| |||||| ||||| || |||||| || || ||||||||| |||| ||| Sbjct 1087595 TCGGCCACGTAGAACTGCACCAGACAGTGGCAGGGGGGCAGAGCCATGGCCCCCAGGTCA 1087654 Query 30043 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAG-GTC 30101 ||| ||||| || | || ||||||||| | ||| ||||| ||| | | | ||| || Sbjct 1087655 GCGGGATTCCAAGCACTCATGATGATGCGTCGGTCATCTGGATTGGTTC-GTAGAGTCTC 1087713 Query 30102 CACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTA 30161 | | | |||| ||||||||| || | || ||| | |||| | ||| Sbjct 1087714 AATCACTTGCTGCAACTGATCCACACCTTGTGTAGCGTGGTCCTCGTGCATGCCTCGGTA 1087773 Query 30162 CTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 || || || || || | ||| ||||| || ||||| ||||| || || || Sbjct 1087774 CTGGGCGCCAAAGTGTCGCCATTGGAAGCCATACACTGGTCCAAGATCGCC 1087824 >seq112 Length=422422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 182/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTC-TAGCCCGGTGACGTG 29882 |||| ||| ||||| || | |||||| || ||||| ||||| | ||||| | | || Sbjct 128878 TAGAGGTGCGCGTCGCCGAAGGTGTGCACGAACTCGCCCGGCTGGTAGCC-GCAAATCTG 128936 Query 29883 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 29942 ||| | ||| ||| | || | |||| ||| ||||| |||||||| || || || Sbjct 128937 AGCGAGCATCATCGTAAACAGGGCGTAGGAGGCAATGTTGAAGGGTACGCCCAGAAAGAT 128996 Query 29943 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30002 ||| | | |||||||||||| || || ||| |||||| || || ||||| | Sbjct 128997 GTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCCTGCCGTCGGCGACATAGAACTGGAA 129056 Query 30003 CATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30062 || | ||||| || || || |||||| | | | || |||||||||||| | || Sbjct 129057 CAGGCAATGGCAGGGCGGTAGGGCCATGTGCTCGACATCGCCGGGGTTCCAGGCCGAAAC 129116 Query 30063 GATGATGCGCCTGTCTTCTGGGTTGTTC 30090 |||| || | | || ||||||||| Sbjct 129117 GATGTGCCGGCGGGAGTCCGGGTTGTTC 129144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408572600476028