Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq112 132 7e-26 seq3574 96.9 5e-15 seq4979 84.2 3e-11 >seq112 Length=422422 Score = 132 bits (146), Expect = 7e-26 Identities = 210/301 (70%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 122359 CACCATGAAACAATATCTGGACTTACTGCGTGACGTTCGTGACAACGGGCACGAAAAAGC 122418 ||||||| | | || || ||| | || | |||| | ||||| || || |||||| | Sbjct 129507 CACCATGCAGCCCTACCTCGACCTGATGTGCCACGTGCTCGACAAGGGCCATGAAAAATC 129448 Query 122419 AGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCA 122478 |||||||| || || ||||||| || | |||||| || ||||| || |||||| Sbjct 129447 CGACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGGCAGATGCGTTTCGACCTGGC 129388 Query 122479 AAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCT 122538 || || || ||| || || ||||| ||| | |||||| || ||||| || || | Sbjct 129387 CAAGGGCTTTCCGGTGACGACCACCAAGAAGCTGCACCTCAAGTCAATCATTCACGAATT 129328 Query 122539 TCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTAT 122598 |||||||| | ||||| ||||||||| ||| || | || || || | || Sbjct 129327 GTTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACGGAGTACGCAT 129268 Query 122599 CTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 |||||||| ||||| || || | || | ||||||||||| ||||| ||||| ||||| Sbjct 129267 CTGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCG 129208 Query 122659 T 122659 | Sbjct 129207 T 129207 >seq3574 Length=6226 Score = 96.9 bits (106), Expect = 5e-15 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 122418 CAGACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGC 122477 ||||||| || ||||| ||||| | | || ||| || |||||||| || ||| Sbjct 2693 CAGACCGCACCGGCACCGGCACGCGCAGCCTGTTTGGCCACCAGATGCGCTTCGATCTGA 2752 Query 122478 AAAAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGC 122537 | |||| |||||| ||||||| || || ||||| ||||| |||||||| || | Sbjct 2753 ACGAAGGCTTCCCGGTGGTCACCACGAAGAAGGTGCACCTGAAAAGCATCATCCTGGAAC 2812 Query 122538 TTCTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTA 122597 | ||||||||||| |||||| ||||| || | ||| | || | ||| | | Sbjct 2813 TGCTGTGGTTCCTGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGTGCGCA 2872 Query 122598 TCTGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGC 122657 ||||| | |||||||| | ||||| | || || ||||||||||| ||| |||| Sbjct 2873 TCTGGAACGAATGGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGGC 2932 Query 122658 G 122658 | Sbjct 2933 G 2933 Score = 93.3 bits (102), Expect = 7e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 122787 ACATCGACCAAATCAGCAAGGTCATGGAACAACTGAAAAACGACCCGGACAACCGCCGTA 122846 |||||||||| || | |||| || | || || | || | |||| || || || | Sbjct 2960 ACATCGACCAGATGGCCGAGGTGGTGAAGCAGCTCAGAACCAACCCCGATTCGCGGCGCA 3019 Query 122847 TCATCGTCAGTGCCTGGAACGTGGCTGACCTGGATGAAATGGCGTTAGCACCATGCCATG 122906 |||||||||| |||||||||||||| || ||| | | ||||| | | || ||||||| Sbjct 3020 TCATCGTCAGCGCCTGGAACGTGGCCGAACTGCACAAGATGGCCCTGGTGCCCTGCCATG 3079 Query 122907 CCTTCTTCCAGTTCTA 122922 |||||||||||||||| Sbjct 3080 CCTTCTTCCAGTTCTA 3095 >seq4979 Length=1283317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 169409 GGTACTCAAGTGGTCAACGAGAGCAGACTGTAAATCTGTTGCCTTCGGGCTTCGTAGGTT 169468 ||||| |||| |||||||| || |||||||||||||||| | | || | ||||| ||||| Sbjct 500208 GGTACCCAAGCGGTCAACGGGAACAGACTGTAAATCTGTCGGC-TCTGCCTTCGAAGGTT 500266 Query 169469 CAAATCCTTCCCTCGCCACCA 169489 | |||||||||| | |||||| Sbjct 500267 CGAATCCTTCCCCCTCCACCA 500287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777544166465600