Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020079.1 Length=147737 Score E Sequences producing significant alignments: (Bits) Value seq4021 96.9 3e-15 seq2001 96.9 3e-15 >seq4021 Length=3575 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 39245 GGTGTGGTGATGATTAAAATATCCTTAATGTCAGCCAACATCAATACCGATAAAGGGTAG 39304 || || | |||||| || || || ||| | |||||||| | ||||| || || ||| Sbjct 254 GGGGTAGAGATGATCAAGATGTCGCGGATGCCGGCCAACATGAGCACCGACAAGGGATAG 195 Query 39305 TAGATCATGGGTTTGTCATACACAGGGAGCAATTGCTTGCTCACACTGCGTGTTACCGGA 39364 |||||||| || ||||| ||||| |||| || ||||||||||| ||| || | || Sbjct 194 TAGATCATCGGCTTGTCGTACACCGGGATCAGTTGCTTGCTCATGACGCGGGTCAAGGGG 135 Query 39365 TGAAGGCGGGTTCCACTTCCTCCCGCCAAAATAATACCTTTCA 39407 | || || ||||| ||| ||||| | ||||||||| |||| Sbjct 134 TACAGACGTGTTCCCGATCCGCCCGCGAGAATAATACCCTTCA 92 >seq2001 Length=3286380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 250/376 (66%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 38618 ATCCACCCTTTTTTGAAAGCAATTTCTTCCAAGCACGCAATCTTCAATCCTTGACAGTTC 38677 |||||||||| | |||||||||||| ||| || | || | ||||| | || Sbjct 1833966 ATCCACCCTTGGCGATACGCAATTTCTTCCGGGCAGGCCACTTTGAGGCCTTGGCGCTTT 1833907 Query 38678 TCAATAGTCTGCACGAATTGACCAGCTTCCATCAGACTGGCGTGTGTTCCTGTGTCAAGC 38737 ||||| || | || ||||||||||| | ||| || |||| || || ||||| ||| Sbjct 1833906 TCAATGGTAGCGATAAACTGACCAGCTTCAAGCAGGCTCTCGTGAGTGCCGGTGTCCAGC 1833847 Query 38738 CAAGTAAATCCTCGTCCGAGAACTTCCACTTGTAACTTCCTGTCTTCTAGGTAGCTGCGA 38797 || | | | || || || | || || || | | | ||| | ||| || || || Sbjct 1833846 CAGGCATAGCCCCGCCCCATAATCTCGACATTGAGCGTCCCTTGTTCGAGATACAGTCGG 1833787 Query 38798 TTGATATCAGTGATCTCCAGTTCTCCACGCGCGGAAGGGGTTA-CTTCTAATGCACGTTG 38856 |||| |||||||| || || || ||||| | || || | | | ||| | || ||| Sbjct 1833786 TTGAGGTCAGTGATTTCTAGCTCGCCACGAGATGACGGCTTGAGCCTCTTAGCCAGATTG 1833727 Query 38857 AATAACAGAGTTATCATAGAAATACAAACCTGTGACAGCATAATCTGATTTAGGATTTTC 38916 | | | || ||||| |||||||||| || ||||| || || || || || | | | Sbjct 1833726 ACCACCTGA-TTATCGTAGAAATACAGGCCGGTGACCGCGTAGCTAGACTTCGGCTGTGC 1833668 Query 38917 AGGTTTCTCTTCAATAGAAATAGC-TTGACGATTACTCCCAAATTCAACCACACCGAATC 38975 || || ||||||| | || || || || || |||| || ||||||||| | | Sbjct 1833667 CGGCTTTTCTTCAAGACTGATGGCAGTGCCG-TTCGCATCAAACTCGACCACACCGTACC 1833609 Query 38976 GTTCAGGATCTTTCAC 38991 | || ||||||||||| Sbjct 1833608 GGTCGGGATCTTTCAC 1833593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472577016396320