Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq224 127 1e-23 seq429 104 2e-16 seq3890 91.5 1e-12 seq361 87.8 1e-11 >seq224 Length=2126973 Score = 127 bits (140), Expect = 1e-23 Identities = 387/594 (65%), Gaps = 8/594 (1%) Strand=Plus/Minus Query 475568 GAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGAT 475627 ||||| | |||| | |||| ||| || | ||| || || || ||||| || || Sbjct 1751582 GAAGGGGTGGATTTTTATACCAAGATTTCACGTGCTCGCTTCGAGGAACTTTGTGCTAAT 1751523 Query 475628 CTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAA 475687 | || || ||| | | ||| || ||||| | |||| || ||||| | |||||| Sbjct 1751522 TTATTCCGAGCAACTCTGGTACCGGTGGAACATGCTCTCGCTGACGCTAAAATGGACAAA 1751463 Query 475688 TCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAA 475747 | | || || |||| || || |||||||| || | || || ||||| | || Sbjct 1751462 GGTTCAATTCACGATGTTGTCCTCGTCGGAGGTTCCACTCGCATCCCTAAAATCCAAAAA 1751403 Query 475748 ATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCT 475807 | || | || ||| || || ||| || ||| | || ||||| || ||| Sbjct 1751402 TTACTACAAGGATTTTTCAACGGCAAACCTTTGAATCTGTCCATCAACCCTGACGAGGCT 1751343 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTA 475867 || || ||||| ||||| || |||||||| || | ||| | ||||| | | Sbjct 1751342 GTGGCTTATGGTGCTGCAGTGCAAGCAGCCATCCTGAGTGGTGAC----ACGAGCAGTCA 1751287 Query 475868 AAT--AATAT-TG-TACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGG 475923 ||| || | || |||| || ||||| | || || ||| | ||| | ||||| | | Sbjct 1751286 AATCCAAGACGTGCTACTGGTGGACGTGGCACCTCTCTCACTCGGTATCGAAACTGCGGA 1751227 Query 475924 AGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGT 475983 ||| | ||||| || | || || | || ||| ||||||||||| |||| | || Sbjct 1751226 AGGCGTCATGACCAAGATCATCGAGCGTAACGCTCATATCCCATGCAGAAAACAACAAAC 1751167 Query 475984 ATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAG 476043 || ||||| ||||| ||| | ||| ||||| ||| | |||||||| ||| | Sbjct 1751166 GTTCAGTACTTACGAGGATAACCAACCTGGTGTCACCATTCAAGTATTTGAAGGAGAACG 1751107 Query 476044 AAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGC 476103 | | ||||| || || || ||| ||||||||| | ||| || ||||| | ||| Sbjct 1751106 ATTTATGACTAAGGACAACAATTTACTCGGAACTTTTGACCTTTCTGGAATTCCACATGC 1751047 Query 476104 TCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTAT 476157 || | ||||| || |||||||||| || |||||||| || || ||||| || Sbjct 1751046 ACCTCGTGGAGTCCCAAAAATTGAAGTCACGTTTGATATGGACGCCAATGGAAT 1750993 >seq429 Length=23842 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| || ||||| || ||||| || || |||||||||||||| ||||| || || || Sbjct 6117 GTAACAGAAGCAGTTATCACTGTGCCTGCTTATTTTAATGATTCCCAACGCCAGGCCACG 6176 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | || ||||| ||| | || ||||| || || || |||||||| Sbjct 6177 AAAGATGCCGGGCGTATCGCAGGCCTTGAGGTAAAGCGTATCATCAACGAGCCAACAGCC 6236 Query 474848 GCCGCACTTGCTTATGG 474864 ||| | ||||| ||||| Sbjct 6237 GCCTCGCTTGCCTATGG 6253 >seq3890 Length=880544 Score = 91.5 bits (100), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | || ||||| || || || || ||| |||||| | || | || | || || Sbjct 736883 GCAGTAGGAATTGACTTGGGCACCACATACTCTTGTGTGGGAGTCTTCCAGCACGGCAAG 736824 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||||||||||||||||| || | ||||| || |||||| | || || Sbjct 736823 GTCGAAATTATTGCCAATGACCAAGGAAACCGTACAACGCCTAGTTATGTTGCCTTCACA 736764 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || | ||| |||||||||||||| || |||||| Sbjct 736763 GACACAGAGCGTCTCATTGGAGATGCTGCAAAGAATCAAG 736724 >seq361 Length=37659 Score = 87.8 bits (96), Expect = 1e-11 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| | || ||||| | || || || | |||||||| ||| ||| |||| || Sbjct 10472 TGCACTAGGAATTGACGTGGGCACAACCAAATCTTGTGTAGAAATTTTACAACATGGAAA 10531 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| ||||||||||||||||| || ||||| ||| |||||| | || || Sbjct 10532 GGTCGAAATTATTGCCAATGACCAAGGAAACCTTACAACCCCAGGTTATGTTGCCTTCAC 10591 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||||| | | ||| |||||| ||||||| || ||| || | | |||||| || Sbjct 10592 AGAAACAGGATGTCTCATTGGATATGCTGCGAAGAATCGAGTTTCCATTAATCCCAACAA 10651 Query 474508 TACTATTTTTG 474518 ||| || |||| Sbjct 10652 TACCATCTTTG 10662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267791602117328