Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq6036 699 0.0 seq1030 87.8 2e-12 seq2001 82.4 8e-11 >seq6036 Length=8020 Score = 699 bits (774), Expect = 0.0 Identities = 745/981 (76%), Gaps = 2/981 (0%) Strand=Plus/Plus Query 160867 TGGGAACAGTTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTC 160926 ||||||| || ||| ||| | || || || || ||||| | || | |||||||| Sbjct 33 TGGGAACGTTTCTGTGGTTGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTT 92 Query 160927 GGCGTCCTGATGATTCCCTGC-TTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGT 160985 || | ||| |||||| | || | | || || ||||| |||||| || ||| | Sbjct 93 GGTTGTTTAATG-TTCCCTACATTATTAACAGCAACTTCTTGTTACATCATCGCATTCAT 151 Query 160986 TGGTGCTCCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTA 161045 | ||||| || || || ||||| || || ||||| || || || ||||| | | || Sbjct 152 CGCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTCATTATTATA 211 Query 161046 TGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTT 161105 || |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||| Sbjct 212 CGGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGGTATGCACTT 271 Query 161106 CTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCA 161165 |||||| || ||||||||||| | || || ||| | |||||||||||||||| ||| Sbjct 272 CTACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGGTCCTTACCA 331 Query 161166 ACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACT 161225 | | | || | |||||| | | || | |||||||||||||||| |||||| | Sbjct 332 ATTAATCGTTTGTCACTTCTTATTAGGAGTAGCATCTTACATGGGTCGTGAATGGGAATT 391 Query 161226 TTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGC 161285 ||||||||| | || |||||||||||||| | |||||| | ||||||||| || || || Sbjct 392 ATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTCCAGTAGCAGC 451 Query 161286 AGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCC 161345 ||| |||||| ||| | || || || | ||||||||||| |||||||||| ||||| Sbjct 452 AGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTGATGGTATGCC 511 Query 161346 TCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCT 161405 | | || || |||||||| ||||||| |||| | || |||||||| |||||||||||| | Sbjct 512 TTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGCACAACATTTT 571 Query 161406 CATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGC 161465 |||||||| ||||| ||| || || || ||||| ||||| |||||| | ||| || Sbjct 572 AATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTTTATTCTCAGC 631 Query 161466 AATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCA 161525 ||||||||||| | || || ||||| | |||||||||| || |||| ||| || Sbjct 632 TATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAGCGAATCAAC 691 Query 161526 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGG 161585 ||||| |||||||| ||||||||||||||||| || |||||||||||||| || ||||| Sbjct 692 TAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCACGG 751 Query 161586 GTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTT 161645 |||||||||||| | || |||||||||||||| ||||||||||| || | | ||||| Sbjct 752 TTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTGCTTTACACTT 811 Query 161646 CTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCAT 161705 |||| | ||| ||||| ||| | || |||||||| ||||| |||| | || || || Sbjct 812 CTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTATTAGTACTAT 871 Query 161706 GGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGT 161765 ||| |||||| | || ||||||||||||||||| || | || ||| || ||| || Sbjct 872 GGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGT 931 Query 161766 TATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGA 161825 |||||||| ||||| || | | |||||||||| | | || |||||||| |||||||| Sbjct 932 AATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGGAAGTAATGCACGA 991 Query 161826 GCGCAATGCTCACAACTTCCC 161846 || || || ||||||||||| Sbjct 992 ACGTAACGCGCACAACTTCCC 1012 >seq1030 Length=14900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 157692 GGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAATC 157751 |||| |||||||| ||||||||| | || ||||||| || |||||||||||||||||| Sbjct 9128 GGGTATAGCGCAG-TTGGTAGCGTGCCTGATTTGGGATCAGGAGGTCGCAGGTTCGAATC 9186 Query 157752 CTGTCACCCCGACTT 157766 ||| ||||||||||| Sbjct 9187 CTGCCACCCCGACTT 9201 >seq2001 Length=3286380 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 157690 CGGGGTGTAGCGCAGCTTGGTAGCGCGGTTGCTTTGGGAGCAATAGGTCGCAGGTTCGAA 157749 ||||| |||||||||| ||||||||| ||||||||||||| | |||| |||||| || Sbjct 2471395 CGGGGCGTAGCGCAGCCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGAGGTTCAAA 2471454 Query 157750 TCCTGTCACCCCGAC 157764 |||| || ||||||| Sbjct 2471455 TCCTCTCGCCCCGAC 2471469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547685331953760