Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6036 740 0.0 seq1863 174 2e-38 >seq6036 Length=8020 Score = 740 bits (820), Expect = 0.0 Identities = 757/980 (77%), Gaps = 6/980 (1%) Strand=Plus/Minus Query 124013 GGTGCTGTTAATGCAACCTGTGTAGACT-CAGCAGATGCTAGGTCTAGTGGGAAGTTGTG 124071 || |||||||| ||||| || | ||| || | || |||| |||| |||||||||||| Sbjct 1060 GGAGCTGTTAAAGCAACTGGTA-ATACTTCACCTGAAGCTAAATCTAATGGGAAGTTGTG 1002 Query 124072 TGCATTTCTTTCATGCATAACTTCCATACCCAAGTTTGCTCTGTTTAGAACATCACCCCA 124131 || || | ||| ||||| ||||||||||| || | || | ||| | | |||| |||| Sbjct 1001 CGCGTTACGTTCGTGCATTACTTCCATACCTAAATCAGCACGGTTAACGATATCAGCCCA 942 Query 124132 TGTTGGGACGATTTTTCCGTTAGCATCAACAACTGATTGGTTAAAGTTGAAACCATTCAA 124191 || || | || | | ||| |||||||||||||| ||||||||||| || || Sbjct 941 AGTGTTGATTACACGACCTTGTGAATCTACAACTGATTGGTTGAAGTTGAAACCGTTTAA 882 Query 124192 GTTGAATGCCATTGTGCAGATACCCATAGAGGTTAACCATACACATACAACAGGGAAAAC 124251 |||||| ||||| || | |||||||||| |||||||| | || || ||| || | | Sbjct 881 GTTGAACGCCATAGTACTAATACCCATAGCAGTTAACCAGATACCTAAAACTGGCCATAA 822 Query 124252 TGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACG 124311 |||| ||||||||| | | | ||||||||||||||||| || |||||||| | ||| Sbjct 821 AGCTAAGAAGAAGTGTAAAGCACGAGAGTTGTTGAATGAAGCGTATTGGAAGATTAAACG 762 Query 124312 ACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATA 124371 ||| ||||||||||| ||||| || |||||||| |||||||||||||| ||||| || || Sbjct 761 ACCGAAGTAACCGTGAGCTGCAACGATGTTGTAAGTTTCTTCTTCTTGACCGAATTTGTA 702 Query 124372 ACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGA 124431 ||| ||||| ||| || || |||||||| | |||| |||||| || || | || Sbjct 701 ACCGTAGTTAGTTGATTCGCTTTCAGTTGTTTCACGAATTAAAGAAGAAGTTACTAATGA 642 Query 124432 ACCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAA 124491 ||| ||||| |||||||||||||| || || || | || || || || ||||||||||| Sbjct 641 ACCGTGCATAGCTGAGAATAAAGAACCACCAAATACACCAGCAACACCAGCCATGTGGAA 582 Query 124492 AGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGA 124551 || ||||||| |||||| ||||| |||||||| || ||||| |||||||||||||| || Sbjct 581 TGGGTGCATTAAAATGTTGTGCTCAGCTTGGAATACTAACATGAAGTTGAAAGTACCAGA 522 Query 124552 GATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATAC 124611 ||||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 521 AATACCTAAAGGCATACCATCAGAGAATGAACCTTGACCAATTGGGTATACTAAGAATAC 462 Query 124612 AGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAA 124671 || | || || | |||||| || || |||| || |||||||||||||||| ||||| Sbjct 461 TGCAGAAGCTGCTGCTACTGGAGCAGAGAAAGCTACGAAGATCCAAGGACGCATACCTAA 402 Query 124672 TCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACC-AATAAGGAAGTGGA 124730 | ||| |||| |||||| | | |||||||| | || | || |||||| ||||| Sbjct 401 ACGGTAAGATAATTCCCATTCACGACCCATGTAAGATGCTACTCCTAATAAG-AAGTGAC 343 Query 124731 AAATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCC 124790 ||| | || || ||||||||||| || || ||||| ||||| | | |||||||||| Sbjct 342 AAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCGATTGAAGCTGCTTCCC 283 Query 124791 AGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGA 124850 | |||||||||||||| | ||||||||||| || || | ||||||||||||||||| Sbjct 282 AAATTGGGTAGAAGTGCATACCGATAGCGTTAGAACTAGGGATAACTGCACCAGAGATGA 223 Query 124851 TGTTGTTACCATATAAGAAAGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAG 124910 |||||||||| ||||| || ||||| |||||||| || | ||| || |||||||| || | Sbjct 222 TGTTGTTACCGTATAATAATGAACCTGCTACTGGCTCACGGATACCATCGATATCAACTG 163 Query 124911 GAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAA-GCATGGAATC 124969 |||| ||||| || ||||| | |||| |||| | | |||||| | ||| | | |||| | Sbjct 162 GAGGAGCTGCGATGAATGCGATGATGTAACAAGAAGTTGCTGTTAATAATGTAGGGAA-C 104 Query 124970 ATTAGAACACCAAACCAACC 124989 |||| | |||||||||||| Sbjct 103 ATTAAACAACCAAACCAACC 84 >seq1863 Length=6263 Score = 174 bits (192), Expect = 2e-38 Identities = 450/672 (67%), Gaps = 18/672 (3%) Strand=Plus/Plus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| || | ||| || || |||||||| || || || ||||| || || |||||||| Sbjct 5601 AAATGGCGTTAAATGCTTGGCAACACCAATCGGGCCAACACCAGGGCCGCCGCCTCCATG 5660 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATG 138279 ||||||||||| || || || ||||| | ||| || ||||| || || ||| | | || Sbjct 5661 AGGAATACAGAAGGTTTTGTGCAAATTCAAATGGCAAACATCCGCCCCAATATTGGC-TG 5719 Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339 || | | || || || ||||| | ||| || ||||| | ||| || || ||||||| Sbjct 5720 GTGAAGTCAACCCAACTTGGGCATTCATATTGGCTCCATCCATATAAACTTGGCCACCAT 5779 Query 138340 TGTCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATG 138399 | ||||||| | | ||| || | | || | |||||| || ||||| || || | Sbjct 5780 TTTCATGAATTAATTCACAAATTTCAATAATTGATTCTTCAAAAACGCCATGGGTGGAAG 5839 Query 138400 GATATGTAATCATAATACATG--AGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAG 138457 |||| |||| ||| | ||| | | | || | | ||| || ||||| | Sbjct 5840 GATAAGTAACCATTAAACAGGATAAATTTGCAGCATGTTC--CATAGCTTTGGCACGCAA 5897 Query 138458 ATCTTTGATGTCTATGTTGCCATCATCATCACA-CTTGACACCTACAACTTTCATTCCTG 138516 ||| | || || ||||||| |||||||| ||| ||| || |||||||| || | Sbjct 5898 ATCAGCCACATCAATATTGCCATTTTCATCACATTTTGTTACC-ACCACTTTCATGCCAG 5956 Query 138517 CCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTA-TCAGACATACATTT 138575 |||| || || ||||||||| || |||||||| ||| |||| | || || | |||| Sbjct 5957 CCATCACCGCCGAAGCAGGATTTGTACCATGTGCCGACGACGGTATTAAGGCA-ATATTT 6015 Query 138576 CTTTTATCATCTCC---TGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATAC 138632 || | |||||| ||| | ||| || || || | | || ||||| ||| Sbjct 6016 CTATGCAAATCTCCCCGTGAGGC---ATGGTAAGCCCTAATCACAAGCAAGCCTGCGTAC 6072 Query 138633 TCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACAT 138692 || || |||| ||||| ||| || ||||| | | |||||| || || || ||| | Sbjct 6073 TCGCCTTGTGCTCCTGAGTTTGGCTGTAAACTAACCGCATCAAAGCCAGTAATTTCAGAA 6132 Query 138693 AACCATTTCTG-TAAGTCATCTATTATCTTTTGATAACCCATGGTCTGTATCATAGGTGT 138751 | ||| ||| ||| | ||||| || | || |||||| || ||| | |||| Sbjct 6133 AGCCA-AGCTGATAAATTTTCTATAATTTCTTTATAACCAGCTGTTTGTGAGCTTGGTGC 6191 Query 138752 ATGTGGATGCACGTTGGCAAATTCTTCCCATGACACAGGCATCAGTTCTGCTGCTGCATT 138811 | ||||| | | | ||| ||| ||| | ||||| |||| ||| | | |||||| Sbjct 6192 AAACGGATGAAGGCCGCCAATTTCAGGCCAAGTAACAGGTATCATTTCGGTAGTTGCATT 6251 Query 138812 TAGTTTCATTGT 138823 |||||||| || Sbjct 6252 CAGTTTCATGGT 6263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578933002130720