Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq6036 758 0.0 seq3878 93.3 6e-14 seq1443 84.2 3e-11 >seq6036 Length=8020 Score = 758 bits (840), Expect = 0.0 Identities = 764/993 (77%), Gaps = 0/993 (0%) Strand=Plus/Minus Query 26725 TCAGCAGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAAT 26784 ||| | | ||| | ||| ||||| || || || ||||| | |||||| || || || | Sbjct 1033 TCACCTGAAGCTAAATCTAATGGGAAGTTGTGCGCGTTACGTTCGTGCATTACTTCCATA 974 Query 26785 CCAAGACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCA 26844 || | | |||||||||| | | || ||||||||||||| |||||||| |||||||| Sbjct 973 CCTAAATCAGCACGGTTAACGATATCAGCCCAAGTGTTGATTACACGACCTTGTGAATCT 914 Query 26845 ATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGT 26904 | || || || ||||||||||||||||| | ||||| ||||| || | ||| | Sbjct 913 ACAACTGATTGGTTGAAGTTGAAACCGTTTAAGTTGAACGCCATAGTACTAATACCCATA 854 Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 || || |||||||| || | ||| |||||| ||| | ||||||||| || | ||| ||| Sbjct 853 GCAGTTAACCAGATACCTAAAACTGGCCATAAAGCTAAGAAGAAGTGTAAAGCACGAGAG 794 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATG 27024 |||||||||||||| ||||||||||| |||||||||||||| || || ||||| |||||| Sbjct 793 TTGTTGAATGAAGCGTATTGGAAGATTAAACGACCGAAGTAACCGTGAGCTGCAACGATG 734 Query 27025 TTGTAGGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTC 27084 ||||| || ||||||||||||||||| || ||||| ||||| ||| || ||||||| Sbjct 733 TTGTAAGTTTCTTCTTCTTGACCGAATTTGTAACCGTAGTTAGTTGATTCGCTTTCAGTT 674 Query 27085 GTCTCACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCA 27144 || ||||| | | ||||| || || | ||||||||||| ||||| | ||| ||| Sbjct 673 GTTTCACGAATTAAAGAAGAAGTTACTAATGAACCGTGCATAGCTGAGAATAAAGAACCA 614 Query 27145 CCGAATACCCCAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCC 27204 || ||||| ||||||||||| ||||||||| |||||||| | || ||||| || || Sbjct 613 CCAAATACACCAGCAACACCAGCCATGTGGAATGGGTGCATTAAAATGTTGTGCTCAGCT 554 Query 27205 TGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAA 27264 |||||||| | |||| |||| ||||||||||| ||||| | ||||||| |||| ||||| Sbjct 553 TGGAATACTAACATGAAGTTGAAAGTACCAGAAATACCTAAAGGCATACCATCAGAGAAT 494 Query 27265 GAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAA 27324 ||||||||||| | || || || | |||||||||| || || || ||||||||||| Sbjct 493 GAACCTTGACCAATTGGGTATACTAAGAATACTGCAGAAGCTGCTGCTACTGGAGCAGAG 434 Query 27325 TATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCC 27384 | ||||| ||||||| ||||||||||||||||| || || | |||||| ||||| ||| Sbjct 433 AAAGCTACGAAGATCCAAGGACGCATACCTAAACGGTAAGATAATTCCCATTCACGACCC 374 Query 27385 ATATAAGCATAGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTA 27444 || |||| | || | | |||||| | || | | |||| ||||||||||||| Sbjct 373 ATGTAAGATGCTACTCCTAATAAGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTG 314 Query 27445 TACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCA 27504 || ||||||||||||| ||| ||||||||||| |||||||||||||| | |||||| || Sbjct 313 TATAACCACTCATCGATTGAAGCTGCTTCCCAAATTGGGTAGAAGTGCATACCGATAGCG 254 Query 27505 TTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCA 27564 || ||||| |||| |||||||||||| ||||||||||| || || | | |||||| || Sbjct 253 TTAGAACTAGGGATAACTGCACCAGAGATGATGTTGTTACCGTATAATAATGAACCTGCT 194 Query 27565 ACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAG 27624 || || ||||| ||||| || ||||| || || || |||||||||||||||| ||| | Sbjct 193 ACTGGCTCACGGATACCATCGATATCAACTGGAGGAGCTGCGATGAATGCGATGATGTAA 134 Query 27625 CAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAA 27684 || |||||||| ||| | ||| |||| ||| | ||| |||||||| | || ||| Sbjct 133 CAAGAAGTTGCTGTTAATAATGTAGGGAACATTAAACAACCAAACCAACCGATGTATAAA 74 Query 27685 CGGTTGTTAGTTGATGTCACCCACTCACAGAAA 27717 ||||| | ||| || | ||| |||||||| Sbjct 73 CGGTTTTCAGTACTAGTAATCCAACCACAGAAA 41 >seq3878 Length=2387 Score = 93.3 bits (102), Expect = 6e-14 Identities = 250/379 (66%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||| || || || || || | || || || || ||||| | |||| ||| Sbjct 59 CCGGTGGCGATGACGAAGTCTTCCGCTTGTTGCTGCTGCAGCATCAGCCACTGCATCTCA 118 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 || ||||| |||| || |||||||| || || || || || || || | | || Sbjct 119 ACGTAATCCTTGGCGTGGCCCCAGTCGCGCTTGGCGTCGAGGTTGCCCAGGAACAGGCAT 178 Query 47908 TCTTGCTTACCTTCAGA-GATTGCTTTT-AATGCTCTTGTAATCTTACGAGTTACAAAAG 47965 | ||| | || ||| || ||| || || | || ||||| || || || || | Sbjct 179 TTCTGCGTGCC--CAGGTGAATGCGGGCCAAGGCGCGGGTGATCTTGCGCGTGACGAAGG 236 Query 47966 TTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGT 48025 |||| || || |||| |||||||| || || | || || | ||||||||||| |||| Sbjct 237 TTTCGCCGCGGATTGGCGATTCATGGTTGAACAAGATGCCGTTGCAGGCATACATGCCGT 296 Query 48026 ATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAG 48085 | | || || |||||| |||||||| ||||| | || || || |||| || Sbjct 297 AAGCCTCGCGGTAGTTCACCGTGATCCAGTAGCCATACATCTTGGCCACGGCATAGGGGC 356 Query 48086 AACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTT 48145 || || || || || |||||||| ||| || || |||||| || || || | Sbjct 357 TGCGCGGGTAAAAGGGCGTGGTCTCGCGCTGCGGCACTTCCTGCACCAGGCCGTAGAGCT 416 Query 48146 CACTGGTGGATGCTTGATA 48164 | |||||| |||||||| Sbjct 417 CGGAGGTGGAGGCTTGATA 435 >seq1443 Length=15309 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 53484 GCGGAGAGGGTGAGATTCGAACTCACGGAG-GCTTTCACCT-CGCTGGTTTTCAAGACCA 53541 ||||| |||||| ||||||||| ||||| | |||| |||| ||| ||||||||||||| Sbjct 12836 GCGGACAGGGTGGGATTCGAACCCACGGTGAGCTTGCACCCACGCCGGTTTTCAAGACCG 12895 Query 53542 GAGCCATAAACCACTCGACCACCTCTCC 53569 | ||| |||||| |||| |||||| ||| Sbjct 12896 GTGCCTTAAACCGCTCGGCCACCTGTCC 12923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665419232407520