Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1514 129 7e-25 seq329 89.7 6e-13 >seq1514 Length=8380 Score = 129 bits (142), Expect = 7e-25 Identities = 459/705 (65%), Gaps = 17/705 (2%) Strand=Plus/Plus Query 75311 CACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTC 75370 || || || || || | |||||||| |||||||||| || ||| | || ||||| Sbjct 3342 CATGCCACTCCCACATTATTCAATGCAGGTACACCAAAGCCACAGCTATCGTCATGCTTT 3401 Query 75371 CTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCG 75430 | | ||| || || |||||||| | ||||| || | || | | | | ||||| Sbjct 3402 TTATTAACCATGAAAGACGACTCAATAGATGGTATTTACGATACATTAAAGCAATGTGCC 3461 Query 75431 CAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAA 75490 |||| ||| | | ||| || |||||||| | ||| ||| |||| || |||| | Sbjct 3462 AAAATATCACAATCGGCGGGTGGTATTGGCCTAAGCATACATAATGTAAGGGCCACTGGT 3521 Query 75491 TCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTT 75550 || ||| || |||||||| ||| | || || || |||||| | || ||||| Sbjct 3522 TCGTATATAAAAGGTACAAATGGCACTTCAAACGGCATAATACCAATGTTGCGGGTATTC 3581 Query 75551 AACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTC 75607 || | || || ||||||||| |||| | || | |||||||| || | || | Sbjct 3582 AATGATACCGCTCGCTATGTAGATCAGGGAGGTGGCAAGCGCAAGGGCTCATTTGCCATA 3641 Query 75608 TACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGG 75666 || ||||| || |||||||||||| | | ||| | | | || | || ||||| || Sbjct 3642 TATTTGGAGCCTTGGCATGCCGATGTTTTTGAGCTTTTGCAATTGAAGAAA-AACCACGG 3700 Query 75667 TGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCAT 75726 | | ||||| || | | ||||| |||| || ||||||| || || | || || Sbjct 3701 TAAAGAAGAAATGCGTGCTCGTGATCTTTTTTACGCCATGTGGATACCTGATTTATTTAT 3760 Query 75727 GAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGAC-AAGGCACCAGGTC 75785 ||||||||| || || | ||||| || | || || || || || ||||| Sbjct 3761 GAAGCGGGTGGAAGATAACGACGTTTGGTCGCTAATGTGCCCCAACGAATGC-CCAGGCT 3819 Query 75786 TCTCCGA-CGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGT 75844 | |||| || | || |||| ||||||| || |||||| || ||| || || Sbjct 3820 TGGCCGATTGCTAT-GGCGAGGCATTTGAAGAGCTTTACACACGTTACGAAAGAGAAGGA 3878 Query 75845 AGAGCCAATGCGACTGTACCAGCC----GCCGATGTTTGGAAGGCTATTCTCAAATCACA 75900 | || | || ||| |||| | ||| || ||| |||| ||| | || Sbjct 3879 AAAGTACGTAAAACGGTAAAAGCCCAAGACTTATGGTTTGAA--ATATT-GGAAAGC-CA 3934 Query 75901 GACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCA 75960 | ||| ||||| ||||| || ||||| | || ||||| ||| ||| |||||||| Sbjct 3935 AATGGAAACTGGCACACCCTACATGCTATTTAAAGATGCAGCCAACTCGAAAAGTAACCA 3994 Query 75961 AAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAAT 76005 ||| || | || || || || |||||||| ||||| || ||||| Sbjct 3995 AAAAAACCTTGGCACCATAAAAAGCTCAAACCTTTGTACTGAAAT 4039 Score = 86.0 bits (94), Expect = 7e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 ||| || |||||||||| ||| | || || ||||||||||||| ||| | | Sbjct 4486 TTTAATCATGAAAAACTAAGTGAGGTAACCAAACAAATTACCAAAAATCTTAACAAAATA 4545 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || ||| ||| | ||| || ||||| || || ||||| |||||||| ||| |||| Sbjct 4546 ATAGACGTAAACTATTACCCTGTTGAAGAGGCTCGCAAGTCGAATATGCGCCACCGACCA 4605 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG 76255 || ||| | ||||| || || || || |||| |||||| ||| Sbjct 4606 ATAGGTATAGGTGTACAGGGCCTTGCCGATGCATTTATATTG 4647 >seq329 Length=129497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 255/385 (66%), Gaps = 14/385 (4%) Strand=Plus/Minus Query 175309 GGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTC 175368 || || || || ||||| || || | || || || || || || |||||| | || || Sbjct 85562 GGCAACCCGGGGACGGGCAAAACTTTGCTGGCGCGGGCGATTGCCGGTGAAGCCAAGGTG 85503 Query 175369 CCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCA 175426 || ||| || || | || | | | ||||||| || ||||| ||||| ||||||||| Sbjct 85502 CCGTTCTTCAGCATT--TCCGGCTCCGACTTTGTTGAAATGTTCGTTGGCGTGGGTGCCG 85445 Query 175427 AAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAA---CCATGTATTGTCTTCA 175483 | || ||||| | || || | ||| | || || || || || |||||| Sbjct 85444 CGCGCGTACGCGACATGTTCGAGAATGCCA---AGAAGCACGCGCCTTGCATCATCTTCA 85388 Query 175484 TTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGC--CAGCAAATGA 175541 |||| || || |||||||| || || ||| | || || | || | |||| ||| Sbjct 85387 TTGACGAAATCGATGCGGTCGGTCGTCATCGCGGTGCCGGCC-TCGGCGGCGGCAA-TGA 85330 Query 175542 CGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGAC 175601 |||| | || || || | || || | || ||||||||||| ||||| | | | Sbjct 85329 CGAGCGCGAGCAGACCCTGAACCAGATGCTGGTTGAGATGGATGGTTTTGAAGGTCACGC 85270 Query 175602 TGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCG 175661 || || | || || || || || ||||| |||||| || ||| |||| | | || Sbjct 85269 CGGGATCATCGTCATCGCTGCAACCAATCGTCCGGATATTCTCGATCCCGCCTTGTTGCG 85210 Query 175662 CCCGGGTCGTTTTGATCGCAAGATC 175686 |||||| || ||||||||| || || Sbjct 85209 CCCGGGGCGCTTTGATCGCCAGGTC 85185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596502217463680