Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq329 196 2e-45 seq775 136 1e-27 seq2001 113 1e-20 >seq329 Length=129497 Score = 196 bits (216), Expect = 2e-45 Identities = 186/238 (78%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||| ||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || | | ||||||| || ||||||||||| | ||| ||||||||||||||| || Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 ||| | ||||| ||||| ||||| ||| |||||||| | ||| |||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40739 || ||||||| |||||||| ||| || |||||||||||||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 Score = 156 bits (172), Expect = 1e-33 Identities = 338/498 (68%), Gaps = 22/498 (4%) Strand=Plus/Minus Query 39337 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39396 |||||| || | ||||||||| | | || || ||| | ||| ||||| || ||| Sbjct 51049 CCGAGGACAGGGTCGCCGCCATGAAGGCCGCGCAGTGGTGGGCCTTAAGCCAGGCGGTGT 50990 Query 39397 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39456 |||| | ||||| |||| || || | ||||| |||||||||| |||| | |||||| Sbjct 50989 GGTAGGTGATGACAGCGTAGGCTGCGGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACT 50930 Query 39457 GGACCAGCACGTCCCACA-CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCT 39515 | || || ||| | | |||| || || ||| ||||||| || ||| Sbjct 50929 TGGTCATCAGGTCGAATAACTGCTCGGCCAGCGCCGGGTT-GTAGCCTTTTTCCTTCGC- 50872 Query 39516 CCCTTCTGGAA-GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGC 39574 ||| | | || | || || | |||||||| | |||| |||||| ||||||||||| Sbjct 50871 CCCGGCGGCAATGGTCTCGCGGTGCTTGGCCATTTCATCGGCCTTCTTTTTGCCCATCGC 50812 Query 39575 CCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTG 39634 |||||| |||| |||||| || || ||||| ||| | |||||||||| | || | Sbjct 50811 CCGGCGCAGCATGTCGGCACCGCCCAGCGTGTAGCCGCCGATGACCTGCGATATCTGCAT 50752 Query 39635 CACCTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTC 39694 ||||| |||||||| | ||||| | ||||||| ||||||| | | Sbjct 50751 GACCTGTTCCTGGTACACGATGACGCCGTAGGTCGG------------CGACAGGCAGGC 50704 Query 39695 GGCCACCTCGGGGTGG--ATCGGCGTGATCGCCTGCTGCCCGTTCTTACGGAGGGCGTAG 39752 || || ||||||||| || | | |||| ||||||||| ||||| || ||| | || Sbjct 50703 GGTCAGGTCGGGGTGGAAATAGTC--GATCTTCTGCTGCCCCTTCTTGCGCAGGATGAAG 50646 Query 39753 TTCGT-GTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGAT 39811 |||| | ||| ||| | ||| ||||| ||||| ||||| | ||||| ||| Sbjct 50645 -TCGTCGACCATCCCGGAGCCGAGCGGCCCCGGTCGGTAGAGCGCCAGCACGGCGATGAT 50587 Query 39812 GTCCTCGAAGTTGTCCGG 39829 |||||||||| ||| || Sbjct 50586 GTCCTCGAAGCGGTCGGG 50569 >seq775 Length=20816 Score = 136 bits (150), Expect = 1e-27 Identities = 181/250 (72%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 40502 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40561 |||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 40562 GAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40621 || || |||||| || ||| | ||||| || | ||||| |||||||| || Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723 Query 40622 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40681 || | || || || || ||||| ||| | |||||| || |||||||| ||||| Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783 Query 40682 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGGATGATCATGTCGATCTC 40738 || ||||| ||||||||| |||||||||||| | |||||| | | |||||| Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCATGCCCAGGATGACC---TTGATCTC 840 Query 40739 GTACTGGAGC 40748 | | | |||| Sbjct 841 GAATTCGAGC 850 >seq2001 Length=3286380 Score = 113 bits (124), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 40418 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40477 |||| |||| |||||| ||||| | ||| |||||||| ||| || | ||| Sbjct 2541118 TCCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGAT 2541059 Query 40478 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40535 |||||||| || || || || |||||| ||||||| ||||| | |||||| || Sbjct 2541058 GACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGT 2541001 Query 40536 TCGGGGTTCAGGAACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40595 || || ||||||||||||||||||| || | || | ||||| || || || ||||| Sbjct 2541000 TCCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATG 2540941 Query 40596 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40648 | || ||||||||||||| || ||||| || || || || || ||||| Sbjct 2540940 CGCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163867214751248