Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021304.1 Length=51552 Score E Sequences producing significant alignments: (Bits) Value seq329 199 1e-46 seq775 136 1e-27 seq2001 113 1e-20 >seq329 Length=129497 Score = 199 bits (220), Expect = 1e-46 Identities = 187/238 (79%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||| ||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 ||| | | ||||||| || ||||||||||| | ||| ||||||||||||||| || Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 ||| | ||||| ||||| ||||| ||| |||||||| | ||| |||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 41027 || ||||||| |||||||| ||| || |||||||||||||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 Score = 143 bits (158), Expect = 9e-30 Identities = 335/498 (67%), Gaps = 22/498 (4%) Strand=Plus/Minus Query 39625 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGC 39684 |||||| || | ||||||||| | | || || ||| | ||| ||||| || ||| Sbjct 51049 CCGAGGACAGGGTCGCCGCCATGAAGGCCGCGCAGTGGTGGGCCTTAAGCCAGGCGGTGT 50990 Query 39685 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACG 39744 |||| | ||||| |||| || || | ||||| |||||||||| |||| | |||||| Sbjct 50989 GGTAGGTGATGACAGCGTAGGCTGCGGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACT 50930 Query 39745 GGACCAGCACGTCCCACA-CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCT 39803 | || || ||| | | |||| || || ||| ||||||| || ||| Sbjct 50929 TGGTCATCAGGTCGAATAACTGCTCGGCCAGCGCCGGGTT-GTAGCCTTTTTCCTTCGC- 50872 Query 39804 CCCTTCTGGAA-GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGC 39862 ||| | | || | || || | |||||||| | |||| |||||| ||||||||||| Sbjct 50871 CCCGGCGGCAATGGTCTCGCGGTGCTTGGCCATTTCATCGGCCTTCTTTTTGCCCATCGC 50812 Query 39863 CCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTG 39922 |||||| |||| |||||| || || ||||| ||| | |||||||| | | || | Sbjct 50811 CCGGCGCAGCATGTCGGCACCGCCCAGCGTGTAGCCGCCGATGACCTGCGATATCTGCAT 50752 Query 39923 CACTTGCTCCTGGTAGATGATGAGCTGGAAGGTCGGGTCCAGGATCTCCGACAGGGACTC 39982 || || |||||||| | ||||| | ||||||| ||||||| | | Sbjct 50751 GACCTGTTCCTGGTACACGATGACGCCGTAGGTCGG------------CGACAGGCAGGC 50704 Query 39983 GGCCACCTCGGGGTGG--ATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAG 40040 || || ||||||||| || | | |||| ||||||||| ||||| || ||| | || Sbjct 50703 GGTCAGGTCGGGGTGGAAATAGTC--GATCTTCTGCTGCCCCTTCTTGCGCAGGATGAAG 50646 Query 40041 TTCGT-GTGAGACCCCACGCCCATCGGACCAGGACGGTACAGCGCGACGACGGCCGAGAT 40099 |||| | ||| ||| | ||| || || ||||| ||||| | ||||| ||| Sbjct 50645 -TCGTCGACCATCCCGGAGCCGAGCGGCCCCGGTCGGTAGAGCGCCAGCACGGCGATGAT 50587 Query 40100 GTCCTCGAAGTTGTCCGG 40117 |||||||||| ||| || Sbjct 50586 GTCCTCGAAGCGGTCGGG 50569 >seq775 Length=20816 Score = 136 bits (150), Expect = 1e-27 Identities = 181/250 (72%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 40790 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40849 |||||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 40850 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40909 || || |||||| || ||| | ||||| || | ||||| |||||||| || Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723 Query 40910 GGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAA 40969 || | || || || || ||||| ||| | |||||| || |||||||| ||||| Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783 Query 40970 GTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT---CTGGATGATCATGTCGATCTC 41026 || ||||| ||||||||| |||||||||||| | |||||| | | |||||| Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCATGCCCAGGATGACC---TTGATCTC 840 Query 41027 GTACTGGAGC 41036 | | | |||| Sbjct 841 GAATTCGAGC 850 >seq2001 Length=3286380 Score = 113 bits (124), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 40706 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40765 |||| |||| |||||| ||||| | ||| |||||||| ||| || | ||| Sbjct 2541118 TCCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGAT 2541059 Query 40766 CACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40823 |||||||| || || || || |||||| ||||||| ||||| | |||||| || Sbjct 2541058 GACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGT 2541001 Query 40824 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40883 || || ||||||||||||||||||| || | || | ||||| || || || ||||| Sbjct 2541000 TCCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATG 2540941 Query 40884 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGAC 40936 | || ||||||||||||| || ||||| || || || || || ||||| Sbjct 2540940 CGCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164827111740848