Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1514 190 6e-43 seq2557 114 4e-20 >seq1514 Length=8380 Score = 190 bits (210), Expect = 6e-43 Identities = 585/894 (65%), Gaps = 17/894 (2%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 ||||| | || ||| || ||||| || || || |||||||| | || || |||||| Sbjct 4048 TATTCCATTATTTCAGTACAAAGGTTTGAGCTTTTTATGGTGCCAAGGTTTTTTTGGTTA 3989 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||| ||| ||||| || |||| ||||| || || || || ||||| || Sbjct 3988 CTTTTCGAGTTGGCTGCATCTTTAAATAGCATGTAGGGTGTGCCAGTTTCCATTTGGCTT 3929 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTA-TCTGCCTTCCGA 155809 |||| || | | ||| | ||| |||| || | | || ||| | | ||||| Sbjct 3928 TCCAATATTTCAAACCATAAGTCTTGGGCTTTTACC-GTTTTACGTACTTTTCCTTCTCT 3870 Query 155810 CTCATATTTCATATACAGCG-TTCGGTAAT-CCTCACCGTAACAATCACTCAGTCCAGGG 155867 || || | || ||| ||| ||| |||| || || ||||| || || ||| Sbjct 3869 TTCGTAACGTGTGTAAAGCTCTTCA--AATGCCTCGCCATAGCAATCGGCCAAGCCTGGG 3812 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACA 155927 || | | |||||| | |||||||||| | ||| | || |||| |||||||| | Sbjct 3811 CATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCTTCCACCCGCTTCATAAATAAA 3752 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGC---CTTTGACTCCTCATCGCCGTGA 155984 ||| ||| || || || ||||| || | || | || || | | || || Sbjct 3751 TCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGCATTTCTTCTTTACCGTGGTTT 3692 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 |||||| | || || | || || ||| | ||| ||||||| ||| || ||| Sbjct 3691 TTCTTCAATTGC---AAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATATATGGCA 3635 Query 156045 AAACTACCATTCCTCTTGCCACC---CTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || || || | ||||||||| |||||||||||| ||||| || | |||||| || Sbjct 3634 AATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATTGAATACC 3575 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | | ||| || || || || || ||||||||||| || || |||| |||||||| Sbjct 3574 CGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGAACCAGTG 3515 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | | |||||||| || ||| ||||||||||| | | ||| || |||| || ||| Sbjct 3514 GCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTTGGCACAT 3455 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCAC 156281 | ||||| |||| | ||||||| || || || || |||| ||| | || || | |||| Sbjct 3454 TGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAATAAAAAGCAT 3395 Query 156282 GAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAA 156341 || || || || |||||| || || ||||||| ||| || || ||||| |||| Sbjct 3394 GACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCATGGGTAAAC 3335 Query 156342 TACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCCGTGAAT 156400 | | || | ||| || || || | | || | || || | || ||||| Sbjct 3334 CATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGATATCTATA-CCATGAAT 3276 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | || || | ||| ||||||||| || || ||| | || |||||||||| Sbjct 3275 ACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGCTATATTTCCATCAATTTT 3216 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATC 156514 | ||| |||| ||| || |||||||| || ||||||||| | |||||| Sbjct 3215 TAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATCATAACCAAAATC 3162 >seq2557 Length=1642367 Score = 114 bits (126), Expect = 4e-20 Identities = 191/275 (69%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || ||||| ||| | ||||| ||||||||| Sbjct 1630576 TCCATAGCCTTGATGAGACGACGCTGGATGTAACCTGTTTCTGCAGTTTTGACAGCTGTA 1630517 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| | ||||||||||| || ||||| | | ||| ||| || || Sbjct 1630516 TCAATGAGACCTTCTCGACCACCCATGGCGTGGAAATAGAACTCAGACGGGGTCAGTCCA 1630457 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | ||| ||||||||||||| | | ||| || | ||| ||| | ||| Sbjct 1630456 GCAAGATACGAGTTCTCAACGAAACCTCTTGACTCAGGACCGTAGTCATCTTTGATGAAG 1630397 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || ||||| || | || | || |||| ||||| || || || ||||| || ||| Sbjct 1630396 TGAGGCAGAGTTCGCTTTCGGAAACCAAATGGAATACGTTTGCCCTCTACGTTTTGTTGT 1630337 Query 302815 CCCAGGCACGAAATCATCTGCGAA-ATATTTAAAT 302848 |||| || | ||| | ||| || | ||| |||| Sbjct 1630336 CCCACACAAGCAATAACCTGAAAAGAGATTAAAAT 1630302 Score = 114 bits (126), Expect = 4e-20 Identities = 191/275 (69%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| | ||||||||| || ||||| ||| | ||||| ||||||||| Sbjct 1634681 TCCATAGCCTTGATGAGACGACGCTGGATGTAACCTGTTTCTGCAGTTTTGACAGCTGTA 1634622 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| | ||||||||||| || ||||| | | ||| ||| || || Sbjct 1634621 TCAATGAGACCTTCTCGACCACCCATGGCGTGGAAATAGAACTCAGACGGGGTCAGTCCA 1634562 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | ||| ||||||||||||| | | ||| || | ||| ||| | ||| Sbjct 1634561 GCAAGATACGAGTTCTCAACGAAACCTCTTGACTCAGGACCGTAGTCATCTTTGATGAAG 1634502 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 || ||||| || | || | || |||| ||||| || || || ||||| || ||| Sbjct 1634501 TGAGGCAGAGTTCGCTTTCGGAAACCAAATGGAATACGTTTGCCCTCTACGTTTTGTTGT 1634442 Query 302815 CCCAGGCACGAAATCATCTGCGAA-ATATTTAAAT 302848 |||| || | ||| | ||| || | ||| |||| Sbjct 1634441 CCCACACAAGCAATAACCTGAAAAGAGATTAAAAT 1634407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471647202157132