Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12]
9,036 sequences; 475,911,277 total letters
Query= NC_021339.1
Length=51077
Score E
Sequences producing significant alignments: (Bits) Value
seq329 199 1e-46
seq775 132 2e-26
seq2001 113 1e-20
>seq329
Length=129497
Score = 199 bits (220), Expect = 1e-46
Identities = 187/238 (79%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||| ||||||| |||||||| ||||| ||||| || || ||||||||||||||||
Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
||| | | ||||||| || ||||||||||| | ||| ||||||||||||||| ||
Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429
||| | ||||| ||||| ||||| ||| || ||||| | ||| |||||| ||||||
Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729
Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487
|| ||||||| |||||||| ||| || |||||||||||||| ||||| ||||
Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671
Score = 138 bits (152), Expect = 4e-28
Identities = 334/498 (67%), Gaps = 22/498 (4%)
Strand=Plus/Minus
Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144
|||||| || | ||||||||| | | || || ||| | ||| | ||| || |||
Sbjct 51049 CCGAGGACAGGGTCGCCGCCATGAAGGCCGCGCAGTGGTGGGCCTTAAGCCAGGCGGTGT 50990
Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204
|||| | ||||| |||| || || | ||||| |||||||||| |||| | |||||
Sbjct 50989 GGTAGGTGATGACAGCGTAGGCTGCGGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACT 50930
Query 39205 GGACCAGCACGTCCCACA-CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCT 39263
| || || ||| | | |||| || || ||| ||||||| || |||
Sbjct 50929 TGGTCATCAGGTCGAATAACTGCTCGGCCAGCGCCGGGTT-GTAGCCTTTTTCCTTCGC- 50872
Query 39264 CCCTTCTGGAA-GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGC 39322
||| | | || | || || | |||||||| | |||| |||||| |||||||||||
Sbjct 50871 CCCGGCGGCAATGGTCTCGCGGTGCTTGGCCATTTCATCGGCCTTCTTTTTGCCCATCGC 50812
Query 39323 CCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTG 39382
|||||| |||| |||||| ||||| ||||| ||| | |||||||| | | || |
Sbjct 50811 CCGGCGCAGCATGTCGGCACCGCCCAGCGTGTAGCCGCCGATGACCTGCGATATCTGCAT 50752
Query 39383 CACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTC 39442
||||| |||||||| | ||| | | | ||||| ||||||| | |
Sbjct 50751 GACCTGTTCCTGGTACACGATGACGCCGTAGGTCGG------------CGACAGGCAGGC 50704
Query 39443 GGCCACCTCGGGGTGG--ATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAG 39500
|| || ||||||||| || | | |||| ||||||||| ||||| || ||| | ||
Sbjct 50703 GGTCAGGTCGGGGTGGAAATAGTC--GATCTTCTGCTGCCCCTTCTTGCGCAGGATGAAG 50646
Query 39501 TTCGT-GTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGAT 39559
|||| | ||| ||| | ||| ||||| ||||| ||||| | ||||| |||
Sbjct 50645 -TCGTCGACCATCCCGGAGCCGAGCGGCCCCGGTCGGTAGAGCGCCAGCACGGCGATGAT 50587
Query 39560 GTCCTCGAAGTTGTCCGG 39577
|||||||||| ||| ||
Sbjct 50586 GTCCTCGAAGCGGTCGGG 50569
>seq775
Length=20816
Score = 132 bits (146), Expect = 2e-26
Identities = 180/250 (72%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309
|||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663
Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369
|| || |||||| || ||| | ||||| || | ||||| |||||||| ||
Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723
Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429
|| | || || || || ||||| ||| | ||||| || |||||||| |||||
Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783
Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGGATGATCATGTCGATCTC 40486
|| ||||| ||||||||| |||||| ||||| | |||||| | | ||||||
Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCATGCCCAGGATGACC---TTGATCTC 840
Query 40487 GTACTGGAGC 40496
| | | ||||
Sbjct 841 GAATTCGAGC 850
>seq2001
Length=3286380
Score = 113 bits (124), Expect = 1e-20
Identities = 166/233 (71%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225
|||| |||| |||||| ||||| | ||| |||||||| ||| || | |||
Sbjct 2541118 TCCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGAT 2541059
Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283
||||||||| || || || || |||||| ||||||| ||||| | |||||| ||
Sbjct 2541058 GACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGT 2541001
Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343
|| || |||||||| |||||||||| || | || | ||||| || || || |||||
Sbjct 2541000 TCCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATG 2540941
Query 40344 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396
| || ||||||||||||| || ||||| || || || || || |||||
Sbjct 2540940 CGCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 163307274840648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |