Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq329 199 1e-46 seq775 132 2e-26 seq2001 113 1e-20 >seq329 Length=129497 Score = 199 bits (220), Expect = 1e-46 Identities = 187/238 (79%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||| ||||||| |||||||| ||||| ||||| || || |||||||||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 ||| | | ||||||| || ||||||||||| | ||| ||||||||||||||| || Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 ||| | ||||| ||||| ||||| ||| || ||||| | ||| |||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATCATGTCGATCTCG 40487 || ||||||| |||||||| ||| || |||||||||||||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 Score = 138 bits (152), Expect = 4e-28 Identities = 334/498 (67%), Gaps = 22/498 (4%) Strand=Plus/Minus Query 39085 CCGAGGTGAGCGCAGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAACCACGCCGTGC 39144 |||||| || | ||||||||| | | || || ||| | ||| | ||| || ||| Sbjct 51049 CCGAGGACAGGGTCGCCGCCATGAAGGCCGCGCAGTGGTGGGCCTTAAGCCAGGCGGTGT 50990 Query 39145 GGTACGCGATGAGTCCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAAGG 39204 |||| | ||||| |||| || || | ||||| |||||||||| |||| | ||||| Sbjct 50989 GGTAGGTGATGACAGCGTAGGCTGCGGTGTGCGACTTGTTGAAGCCGTACTCGGCGAACT 50930 Query 39205 GGACCAGCACGTCCCACA-CTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCT 39263 | || || ||| | | |||| || || ||| ||||||| || ||| Sbjct 50929 TGGTCATCAGGTCGAATAACTGCTCGGCCAGCGCCGGGTT-GTAGCCTTTTTCCTTCGC- 50872 Query 39264 CCCTTCTGGAA-GTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGC 39322 ||| | | || | || || | |||||||| | |||| |||||| ||||||||||| Sbjct 50871 CCCGGCGGCAATGGTCTCGCGGTGCTTGGCCATTTCATCGGCCTTCTTTTTGCCCATCGC 50812 Query 39323 CCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTG 39382 |||||| |||| |||||| ||||| ||||| ||| | |||||||| | | || | Sbjct 50811 CCGGCGCAGCATGTCGGCACCGCCCAGCGTGTAGCCGCCGATGACCTGCGATATCTGCAT 50752 Query 39383 CACCTGCTCCTGGTAGATGATCAACTGGAATGTCGGGTCCAGGATCTCCGACAGGGACTC 39442 ||||| |||||||| | ||| | | | ||||| ||||||| | | Sbjct 50751 GACCTGTTCCTGGTACACGATGACGCCGTAGGTCGG------------CGACAGGCAGGC 50704 Query 39443 GGCCACCTCGGGGTGG--ATCGGCGTGATCGCCTGCTGCCCGTTCTTCCGGAGGGCGTAG 39500 || || ||||||||| || | | |||| ||||||||| ||||| || ||| | || Sbjct 50703 GGTCAGGTCGGGGTGGAAATAGTC--GATCTTCTGCTGCCCCTTCTTGCGCAGGATGAAG 50646 Query 39501 TTCGT-GTGAGACCCCACGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCTGAGAT 39559 |||| | ||| ||| | ||| ||||| ||||| ||||| | ||||| ||| Sbjct 50645 -TCGTCGACCATCCCGGAGCCGAGCGGCCCCGGTCGGTAGAGCGCCAGCACGGCGATGAT 50587 Query 39560 GTCCTCGAAGTTGTCCGG 39577 |||||||||| ||| || Sbjct 50586 GTCCTCGAAGCGGTCGGG 50569 >seq775 Length=20816 Score = 132 bits (146), Expect = 2e-26 Identities = 180/250 (72%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 40250 GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGAT 40309 |||||||||||||| || ||||| ||||| |||||||||||||||||||| ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 40310 GAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACC 40369 || || |||||| || ||| | ||||| || | ||||| |||||||| || Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723 Query 40370 GGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAA 40429 || | || || || || ||||| ||| | ||||| || |||||||| ||||| Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783 Query 40430 GTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT---CTGGATGATCATGTCGATCTC 40486 || ||||| ||||||||| |||||| ||||| | |||||| | | |||||| Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCATGCCCAGGATGACC---TTGATCTC 840 Query 40487 GTACTGGAGC 40496 | | | |||| Sbjct 841 GAATTCGAGC 850 >seq2001 Length=3286380 Score = 113 bits (124), Expect = 1e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 40166 TCCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGAT 40225 |||| |||| |||||| ||||| | ||| |||||||| ||| || | ||| Sbjct 2541118 TCCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGAT 2541059 Query 40226 GACCTCGCCACGACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGC 40283 ||||||||| || || || || |||||| ||||||| ||||| | |||||| || Sbjct 2541058 GACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGT 2541001 Query 40284 TCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATC 40343 || || |||||||| |||||||||| || | || | ||||| || || || ||||| Sbjct 2541000 TCCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATG 2540941 Query 40344 CCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGAC 40396 | || ||||||||||||| || ||||| || || || || || ||||| Sbjct 2540940 CGCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163307274840648