Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq112 145 1e-29 seq3574 113 6e-20 >seq112 Length=422422 Score = 145 bits (160), Expect = 1e-29 Identities = 180/242 (74%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTG--C 99009 |||||||||||||| ||||| | ||| |||||||| |||||||||||| || || | Sbjct 129446 GACCGTACCGGTACCGGCACCCGTTCCGTCTTCGGCTGGCAGATGCGTTTCGACCTGGCC 129387 Query 99010 AAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAA 99068 ||| || || ||| || || |||||| | ||| |||| || || || || ||| Sbjct 129386 AAG--GGCTTTCCGGTGACGACCACCAAGAAGCTGC-ACCTCAAGTCAATCATTCACGAA 129330 Query 99069 CTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACC 99128 || |||||||| | ||||||||||||| ||| |||||| | || | || ||| | Sbjct 129329 TTGTTGTGGTTCATTCAAGGCGACACCAACATCTCGTACCTTCAGGAGCACGGAGTACGC 129270 Query 99129 ATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGG 99188 || ||||| | ||||| ||| | | ||||||||||| ||||| ||||| ||||||||| Sbjct 129269 ATCTGGGATGCGTGGGCCGACGAGCACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGG 129210 Query 99189 CG 99190 || Sbjct 129209 CG 129208 >seq3574 Length=6226 Score = 113 bits (124), Expect = 6e-20 Identities = 174/246 (71%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 98946 AAGAAAGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAAC 99005 |||| |||||| ||||| || ||||||| | || |||||||||||||| ||| | Sbjct 2689 AAGACAGACCGCACCGGCACCGGCACGCGCAGCCTGTTTGGCCACCAGATGCGCTTCGAT 2748 Query 99006 TTGCAAGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCA 99064 || | ||||| |||||| |||| || || ||| | ||| ||||| || |||| Sbjct 2749 CTGAACGAAGGCTTCCCGGTGGTCACCACGAAGAAGGTGC-ACCTGAAAAGCATCATCCT 2807 Query 99065 TGAACTGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGT 99124 |||||||||||||||||| ||||| |||| || | ||| | ||| || || Sbjct 2808 GGAACTGCTGTGGTTCCTGCGCGGCGATTCCAACGCCCGCTGGCTGCAGGATCGCGGCGT 2867 Query 99125 AACCATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCA 99184 ||| ||| |||||||||| | |||||||||| || ||||| ||||| ||| Sbjct 2868 GCGCATCTGGAACGAATGGGCCGGGCCCGATGGCGACCTGGGGCCGGTGTACGGCGTGCA 2927 Query 99185 GTGGCG 99190 |||||| Sbjct 2928 GTGGCG 2933 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 99594 TGTCAGCTCTATCAGCGTAGTGCCGACGTGTTCTTGGGTGTGCCGTTTAACATCGCGTCG 99653 || |||||||| ||||| || |||||| | ||| |||| ||||| || |||||||| Sbjct 3118 TGCCAGCTCTACCAGCGCAGCGCCGACATTTTCCTGGGCGTGCCCTTCAACATCGCCAGC 3177 Query 99654 TATGCTCTACTGATTCACATGTTTGCACAGCAG-GCGAATATGGCGGTGGGCGATTTCGT 99712 || || || |||| |||||| | || |||||| |||| | || ||||||||||||| | Sbjct 3178 TACGCGCTGCTGACGCACATGCTGGCGCAGCAGTGCGATT-TGCAGGTGGGCGATTTCAT 3236 Query 99713 CTGGACCGGCGGTGA 99727 |||||| || || || Sbjct 3237 CTGGACAGGTGGCGA 3251 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 99309 ATCGACCAGATTGCCAAAGTCATGGGCCAGTTGAAAAACGACCCGGATAATCGGCGTATC 99368 ||||||||||| ||| | || || ||| | | || | |||| ||| ||||| ||| Sbjct 2962 ATCGACCAGATGGCCGAGGTGGTGAAGCAGCTCAGAACCAACCCCGATTCGCGGCGCATC 3021 Query 99369 ATCGTTAGTGCATGGAACGTAGCTGACCTTGACGATATGGCCTTAGCTCCTTGCCACGCC 99428 ||||| || || |||||||| || || || || | |||||| | | || ||||| ||| Sbjct 3022 ATCGTCAGCGCCTGGAACGTGGCCGAACTGCACAAGATGGCCCTGGTGCCCTGCCATGCC 3081 Query 99429 TTCTTCCAGTTTTAT 99443 ||||||||||| ||| Sbjct 3082 TTCTTCCAGTTCTAT 3096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716555855873440