Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3957 100 3e-16 seq2057 100 3e-16 seq1112 84.2 2e-11 >seq3957 Length=668572 Score = 100 bits (110), Expect = 3e-16 Identities = 141/194 (73%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| |||| || || || || || | || || || | | Sbjct 478687 ATGCAGATCTTCGTAAAAACATTAACAGGGAAGACCATAACCTTAGAGGTTGAGCCTTCA 478746 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || || ||||||||||||||||| || || || || ||||| Sbjct 478747 GACACAATCGATAATGTGAAGGCCAAGATCCAAGACAAAGAGGGCATTCCACCTGATCAG 478806 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || || ||||||| || || |||||||| |||||| ||| ||| ||||||| || Sbjct 478807 CAGCGACTGATCTTCGCTGGCAAACAGCTTGAGGATGGTCG---CACATTGTCAGACTAC 478863 Query 24881 AACATTCA-AAAGG 24893 |||||||| ||||| Sbjct 478864 AACATTCAGAAAGG 478877 >seq2057 Length=842785 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACAC 139143 || || | ||| ||||| ||||| || || || |||||| || ||||| || | || Sbjct 607763 GAAGCAAGGTTACACACTGCCACCTCATCAGGAGAGCTGTACTCCACAATCTCAGTGCAG 607822 Query 139144 AAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCT 139203 | ||| || |||||||| || || | || ||||| ||| || ||||| || |||||| Sbjct 607823 AGATTGCTGCACTTGATGGTGCCAAGGTTCTGTTGGTTGGACTTGCGGTTGCATGCATCT 607882 Query 139204 TTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 ||||| ||||| || || ||||| |||||||| || | || || ||| Sbjct 607883 TTGTAGAGCATGTAGGGAGTGCCTGTTTCCACCTGGGACTGAATGATG 607930 >seq1112 Length=3255245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || ||||| ||||| |||||||| || || || ||||| || |||||||| || || || Sbjct 2620196 AAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAACAGCGCTTGATCTTCGCAGGCAAG 2620137 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891 ||||| |||||| | | | | | ||||| ||||||||||| || Sbjct 2620136 CAGCTTGAGGATGGGCGCACCCTCTCAGACTATAACATTCAGAA 2620093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449846784066080