Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2851 123 4e-22 seq3336 122 1e-21 seq112 107 3e-17 seq1676 96.9 5e-14 seq2001 91.5 2e-12 seq1813 89.7 8e-12 seq1224 87.8 3e-11 >seq2851 Length=3232 Score = 123 bits (136), Expect = 4e-22 Identities = 222/322 (69%), Gaps = 27/322 (8%) Strand=Plus/Plus Query 2175076 TGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGT 2175135 |||| ||||||||||| || || |||| ||| | ||| | || |||| ||| |||| Sbjct 711 TGCCATCGGTGCCGTTCTTGAAGCCGATGGGCGCTGAAAGCCCGGAGGCCAGTTCACGGT 770 Query 2175136 GCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAAT 2175195 |||||||||| ||||||||||||||||| | ||||||||| | | ||| || || | | Sbjct 771 GCACCTGGCTTTCGGTGGTGCGCGCGCCGATGGCGCCCCAGGAAATGAGATCGGCGATGT 830 Query 2175196 AGGGCGCCACCAAAGGGCTGAGAAACTCGACAGCCACGGGCTGGCCGACGTCGACGACCA 2175255 | || ||||||| || ||| | |||||||| || | ||| ||| Sbjct 831 ACTGC---------GGGCTGATGGTGTC--CAGGAATTCGCTGGCCGCCGGC-ACGCCCA 878 Query 2175256 GG---------TCGCGCAGCA---GTCGACGCGATGTGGCGAGGCCGGCGGCCAGGCGGC 2175303 || || |||||| | || ||||||| | ||||| || | | |||| Sbjct 879 GGCGGTTGATCTCCAGCAGCAACTGGCG-CGCGATGCG--CAGGCCTTCGTCGATGCGGT 935 Query 2175304 ACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCT 2175363 | | |||| |||| ||||||| || |||||||||||| || || || ||||| |||| Sbjct 936 AACTCTCGTCCAGGTAGGGGTCGTTGATCAGGCCCTTCCAGCCCACCGTGGTGCGGGGCT 995 Query 2175364 TTTCGACATAGGCGCGCATGAC 2175385 |||||| ||| | ||||| || Sbjct 996 TTTCGAAATACACACGCATCAC 1017 >seq3336 Length=256698 Score = 122 bits (134), Expect = 1e-21 Identities = 127/167 (76%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 1485544 GCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 |||||||||||||| ||| | ||| ||| ||||||||| | | ||||| |||| | Sbjct 71556 GCGGTCTGGATCTCCCGGCTCGTGATGGTGGAGCGCTTGTTGTAGTGGGCCAGACGGCTG 71497 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || |||| | |||| || |||| ||||||||||| || ||||||||| ||| | Sbjct 71496 GCTTCGGCGGCGATACGCTCGAAGATGTCGTTGACGAATCTGTTCATGATGCTCATGGCC 71437 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||| |||||| || ||||||||| |||||||| ||||||||||| Sbjct 71436 TTGCTGGAGACTCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGTA 71390 >seq112 Length=422422 Score = 107 bits (118), Expect = 3e-17 Identities = 247/366 (67%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 2175041 GGCGGTGCGCACGGCATCGAGCGCCGTTGC-CACGCTGCCGTCGGTGCCGTTTTTAAACC 2175099 ||| | ||| | |||||||| ||| | ||| || | |||||||||| ||||| || || | Sbjct 43481 GGCCGAGCGGATGGCATCGACCGC-GATGCGCATGTTGCCGTCGGTTCCGTTCTTGAAGC 43423 Query 2175100 CGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCG 2175159 | ||||| | | || | || |||| |||||| |||||||| |||||||||||||| Sbjct 43422 CAACCGGGCAGGAGAGGCCAGAAGCCAGTTCGCGATGCACCTGCGACTCGGTGGTGCGCG 43363 Query 2175160 CGCCCACGGCGCCCCACGCCACGAGGTCTGCCAAATAGGGCGCCACCAAAGGGCTGAGAA 2175219 | || | ||| ||||| || | ||||| || || ||| | | | ||| | Sbjct 43362 CACCAATGGCTCCCCAGGCAATCAGGTCGGCAGTGTATTGCGGGGTGATGGTGTCGAGGA 43303 Query 2175220 ACTCGACAGCCACGGGCTGGCCGACGTCGACGACCAGGTCGCGCAGCAGTCGACGCGATG 2175279 ||||| || |||| | | | || |||| ||| |||| | || || | Sbjct 43302 ACTCGGTCGCGCAGGGCAGATCCAGTTCATTGACC---TCGAGCAGGATGCGCCG-GGCC 43247 Query 2175280 TGGCG-AGGCCGGCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGCCAGGCCC 2175338 |||| || || || | ||| | | ||| | | |||||| || ||| ||| Sbjct 43246 AGGCGCAGACCTTCGTTGATGCGAAAGGTGTTGTCCATGCGCGGGTCGTTGATCAGCCCC 43187 Query 2175339 TTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACCAGGAGAGCG 2175398 ||||| ||||| || |||||||||||||||| |||| ||||||| || || || || || Sbjct 43186 TTCCAGCCGACTGTGGTGCGCGGCTTTTCGAAATAGACGCGCATCACGACGAGCAGGTCG 43127 Query 2175399 TCGCCG 2175404 ||| || Sbjct 43126 TCGGCG 43121 >seq1676 Length=7853 Score = 96.9 bits (106), Expect = 5e-14 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 2175055 CATCGAGCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAAACCCGACCGGCAACGGCA 2175114 |||||| |||| ||| | ||| ||||||||||| || || || ||||| | || Sbjct 7537 CATCGACCGCCACCTTCACCCCGCCATCGGTGCCGTTCTTGAAGCCCACCGGGCAGCTCA 7596 Query 2175115 GCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGCGCGCGCCCACGGCGCCCC 2175174 | |||| |||| || ||||| |||||||||||||||||||||||| | ||||||| Sbjct 7597 GGCCCGAGGCCAGTTGCCGGTGGGTCTGGCTCTCGGTGGTGCGCGCGCCGATCGCGCCCC 7656 Query 2175175 ACGCCACGAGGTC 2175187 | ||||| ||||| Sbjct 7657 AGGCCACCAGGTC 7669 >seq2001 Length=3286380 Score = 91.5 bits (100), Expect = 2e-12 Identities = 143/198 (72%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 118705 TCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCACCTGGAAGCGGTC-CGAGAGCATGTCG 118763 |||| |||||||| |||||| |||||||| || |||| | | || || | | ||| Sbjct 1517253 TCTCCGCGATCTGCACGGTGAGCCGTTCCTGCACTTG-AAGCCGACGCGCGAACGTATCG 1517195 Query 118764 ACGATGCGCGGGATCTTGCTCAGGCCGATGA---TCCTGCCCGCGGGCAGGTAGCCCACG 118820 |||||||| || |||||||| ||||||| || || | | ||||| || || || Sbjct 1517194 ACGATGCGGGGAATCTTGCTAAGGCCGACGACTTTCTTATTC---GGCAGATAACCGACA 1517138 Query 118821 TGCGCCTTGCCGATA-AAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCAATGTC 118879 ||| ||||||| ||| || ||||||| ||| ||||||||||| | | || || ||||| Sbjct 1517137 TGCACCTTGCC-ATAGAACGGCAGCAAATGATGCTCGCACATACTGTAGAAATCGATGTC 1517079 Query 118880 GCGCACGGTCACCATCTC 118897 ||| | ||||| || Sbjct 1517078 TTTTACGATGACCATTTC 1517061 >seq1813 Length=735787 Score = 89.7 bits (98), Expect = 8e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||| |||||||| |||||| || ||| | |||||||||| ||| || ||||| Sbjct 439193 GTCCTTGATGTAGGTGTTGATGAGCAGACTGTACATTTCTGAGTGGACGTTCTCCATGGC 439134 Query 794646 GATCTGGAAGCCATAAAAGCAG 794667 ||||||||||||||| |||||| Sbjct 439133 GATCTGGAAGCCATAGAAGCAG 439112 >seq1224 Length=1352561 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || ||||||||| | ||||||||| | || || || |||||||| |||||||| Sbjct 928488 GCTGCCAACTACTTGGACATCAAGGGTTTGCTGGACGTGACTTGCAAGACTGTGGCCAAT 928429 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 | |||||||||||| | ||||| || ||||| ||||| || ||||||||| Sbjct 928428 ATGATCAAGGGCAAGACCCCCGAAGAAATCCGAAAGACTTTCAACATCAAG 928378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915285199466804