Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1112 100 2e-16 seq3957 87.8 1e-12 >seq1112 Length=3255245 Score = 100 bits (110), Expect = 2e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| || || |||| ||||| ||| ||||||||||| || ||||| | Sbjct 2620683 TTCCACCTCTCAGTCTGAGAACCAAGTGAAGGGTAGATTCCTTCTGAATATTGTAGTCGG 2620742 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| |||| |||| || || ||||| || |||||||||| || ||||||||| | | Sbjct 2620743 AAAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGG 2620802 Query 34869 GCACCCCCTCCTTGTCGTTTATTTT 34893 | | || |||||||| | ||||| Sbjct 2620803 GGATTCCTTCCTTGTCCTGGATTTT 2620827 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| || || |||| ||||| |||| ||||||||||| || ||||| || Sbjct 2622942 CCTCCTCTCAGTCTGAGAACCAAGTGAAGGGTGGATTCCTTCTGAATATTGTAGTCTGAG 2623001 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| || || ||||| || |||||||||| || ||||||||| | || Sbjct 2623002 AGTGTGCGGCCATCCTCAAGCTGCTTGCCTGCGAAGATCAAGCGCTGCTGGTCTGGGGGG 2623061 Query 34871 ACCCCCTCCTTGTCGTTTATTTT 34893 | || |||||||| | ||||| Sbjct 2623062 ATTCCTTCCTTGTCCTGGATTTT 2623084 Score = 89.7 bits (98), Expect = 3e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||||||||| || ||| ||||| |||| || || ||||| || ||||||||| Sbjct 2620093 TTCTGAATGTTATAGTCTGAGAGGGTGCGCCCATCCTCAAGCTGCTTGCCTGCGAAGATC 2620152 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 | || || |||||| | || | || |||||||| | ||||| Sbjct 2620153 AAGCGCTGTTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATTTT 2620196 >seq3957 Length=668572 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 34790 TTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATC 34849 ||||||||||| ||||| || | |||| |||| || || || || || ||||||||| Sbjct 478874 TTCTGAATGTTGTAGTCTGACAATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATC 478815 Query 34850 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT 34909 ||||| ||||| || | || | ||||| ||||| | || || || || || | Sbjct 478814 AGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCAC--AT--T 478759 Query 34910 ATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||||| || | ||| || || | |||||||||||| || || | || ||||| Sbjct 478758 ATCGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTAC 478699 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 478698 GAAGATCTGCAT 478687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325656932673284