Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq6036 663 0.0 seq2406 82.4 9e-11 >seq6036 Length=8020 Score = 663 bits (734), Expect = 0.0 Identities = 774/1039 (74%), Gaps = 7/1039 (1%) Strand=Plus/Plus Query 177549 TGGGAATCATTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 177608 |||||| ||||| | ||| | ||| ||| | ||||| | || |||||||||| Sbjct 33 TGGGAACGTTTCTGTGGTTGGATTACTAGTACTGAAAACCGTTTATACATCGGTTGGTTT 92 Query 177609 GGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTC 177668 || | ||| | || || | || |||||||| || | |||| |||| ||| || Sbjct 93 GGTTGTTTAATGTTCCCTACATTATTAACAGCAACTTCTTGTTACATCATCGCATTCATC 152 Query 177669 GCTGCTCCCCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 177728 || ||||| || || || ||||| || |||||||| || || || |||||| | | || Sbjct 153 GCAGCTCCTCCAGTTGATATCGATGGTATCCGTGAGCCAGTAGCAGGTTCATTATTATAC 212 Query 177729 GGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTC 177788 ||||||||||||||||||||||||||| | || ||| ||||| || ||| | |||||| Sbjct 213 GGTAACAACATCATCTCTGGTGCAGTTATCCCTAGTTCTAACGCTATCGGTATGCACTTC 272 Query 177789 TATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAA 177848 || || || |||||||| || ||| | ||||||||| | || ||||||||||||| |||| Sbjct 273 TACCCAATTTGGGAAGCAGCTTCAATCGATGAGTGGTTATACAACGGTGGTCCTTACCAA 332 Query 177849 CTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATAT---ATGGGACGTGAGTGGGAA 177905 | | || | ||||||| |||| | | || |||| | ||||| ||||| |||||| Sbjct 333 TTAATCGTTTGTCACTTC-TTATTAGGAG-TA-GCATCTTACATGGGTCGTGAATGGGAA 389 Query 177906 CTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCA 177965 | || |||||| |||||||||| || ||||||| || || | |||||| || || ||| Sbjct 390 TTATCTTACCGTTTAGGTATGCGTCCTTGGATCTTCGTAGCTTTCTCTGCTCCAGTAGCA 449 Query 177966 GCAGCATCCGCAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATG 178025 ||||| || ||||| || |||| || || | ||||||||||||||||| |||| |||| Sbjct 450 GCAGCTTCTGCAGTATTCTTAGTATACCCAATTGGTCAAGGTTCATTCTCTGATGGTATG 509 Query 178026 CCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATC 178085 ||| | ||||| ||||||||||| |||| |||| | ||||||||||| || ||||| || Sbjct 510 CCTTTAGGTATTTCTGGTACTTTCAACTTCATGTTAGTATTCCAAGCTGAGCACAACATT 569 Query 178086 CTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCT 178145 | |||||||| ||||||||| ||||||||||| ||||| ||||| ||| | ||||| Sbjct 570 TTAATGCACCCATTCCACATGGCTGGTGTTGCTGGTGTATTTGGTGGTTCTTTATTCTCA 629 Query 178146 GCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCC 178205 |||||||| || | || |||||||| | | ||||| || || |||| || || Sbjct 630 GCTATGCACGGTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAGCGAATCA 689 Query 178206 CAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCAT 178265 ||||| |||||||| ||||| |||||||||||||| || |||||||| ||||| || Sbjct 690 ACTAACTACGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCAGCTCAC 749 Query 178266 GGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCAC 178325 ||||||||||||||||| ||||||||||| || || ||||||||||| ||| | | ||| Sbjct 750 GGTTACTTCGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTGCTTTACAC 809 Query 178326 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACC 178385 |||||| | || |||||| || | || |||||||| || || | ||| | || Sbjct 810 TTCTTCTTAGCTTTATGGCCAGTTTTAGGTATCTGGTTAACTGCTATGGGTATTAGTACT 869 Query 178386 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGT 178445 ||||| || ||| | || || |||||||||||||| || | | || |||||| ||| Sbjct 870 ATGGCGTTCAACTTAAACGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGT 929 Query 178446 GTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 178505 || ||||||| ||||| || | | |||||||| | | | || |||||||| |||||| Sbjct 930 GTAATCAACACTTGGGCTGATATCGTTAACCGTGCTGATTTAGGTATGGAAGTAATGCAC 989 Query 178506 GAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGAGTCCACACCTGTGGC 178565 ||| | || || || |||||||| | ||| | || ||| ||| ||| || || Sbjct 990 GAACGTAA-CGCGCACAACTTCCCATTAGATTTAGCTTCAGGTGAAGTATTACCAGTTGC 1048 Query 178566 CTTGATTGCTCCATCTGTT 178584 || | |||||| ||||| Sbjct 1049 TTTAACAGCTCCAGCTGTT 1067 >seq2406 Length=10495 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19497 ATTCCTCTATAGCTCAGATGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGA 19556 ||||||| ||||||||| ||||||||| ||||||||||| || ||||||||||||| Sbjct 4619 ATTCCTCGATAGCTCAGTCGGTAGAGCGCCGGACTGTTAATCCGTAGGTCCCTGGTTCGA 4560 Query 19557 TCCCAGGTGGAGGAG 19571 ||||||| | |||| Sbjct 4559 GCCCAGGTCGGGGAG 4545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605598789889760