Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq224 136 3e-26 seq4868 98.7 7e-15 seq361 96.9 3e-14 seq3890 93.3 3e-13 >seq224 Length=2126973 Score = 136 bits (150), Expect = 3e-26 Identities = 677/1060 (64%), Gaps = 35/1060 (3%) Strand=Plus/Plus Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || |||||||| |||| |||||| ||||||||||||| ||||| || | | ||| || Sbjct 1750993 ATTCCATTGGCGTCCATATCAAACGTGACTTCAATTTTTGGGACTCCACGAGGTGCATGT 1751052 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || | | ||| ||||| || ||| || || ||||| | |||||| Sbjct 1751053 GGAATTCCAGAAAGGTCAAAAGTTCCGAGTAAATTGTTGTCCTTAGTCATAAATCGTTCT 1751112 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || || || | ||| || || || ||| ||| ||||| ||||| | || | Sbjct 1751113 CCTTCAAATACTTGAATGGTGACACCAGGTTGGTTATCCTCGTAAGTACTGAACGTTTGT 1751172 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 |||| | || || || | ||| | || || || |||||||| | || | || Sbjct 1751173 TGTTTTCTGCATGGGATATGAGCGTTACGCTCGATGATCTTGGTCATGACGCCTTCCGCA 1751232 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||| | ||| || || ||||| | || || || || | | | ||| | ||| | Sbjct 1751233 GTTTCGATACCGAGTGAGAGAGGTGCCACGTCCACCAGTAGCACGTCTTGGA-TTTGACT 1751291 Query 281741 TC-AGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 | || | |||| || || |||||||| | ||||||||||| || ||||| || || Sbjct 1751292 GCTCGTGTCACCACTCAGGATGGCTGCTTGCACTGCAGCACCATAAGCCACAGCCTCGTC 1751351 Query 281800 AG----GATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTC 281855 || ||| |||| |||| || ||| || |||||||| | || | || | Sbjct 1751352 AGGGTTGATGGACAGATTCA--AAG--GTTTGCCGTTGAAAAATCCTTGTAGTAATTTTT 1751407 Query 281856 TTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA---TT 281912 | ||||| || |||| || ||||| || | |||| || || | ||| || Sbjct 1751408 GGATTTTAGGGATGCGAGTGGAACCTCCGACGAGGACAACATCGTGAA---TTGAACCTT 1751464 Query 281913 TATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGT 281972 | |||| ||| | || | | | | ||| || ||| | ||| |||| || || | Sbjct 1751465 TGTCCATTTTAGCGTCAGCGAGAGCATGTTCCACCGGTACCAGAGTTGCTCGGAATAAAT 1751524 Query 281973 CTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGA 282032 | ||||||||| ||||| ||| | | || || || | |||| | |||||| Sbjct 1751525 TAGCACAAAGTTCCTCGAAGCGAGCACGTGAAATCTTGGTATAAAAATCCACCCCTTCGT 1751584 Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092 |||| | ||| | |||||| | | || | | |||| | ||||| || | | Sbjct 1751585 ACAATGCATCGATTTCAATACTGGCTTCGGAACTACTGGATAACGTGCGTTTCGCTCTCT 1751644 Query 282093 CACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA-TTGAT-TCAAATCTGTTTTATA 282150 | |||||||| | || | ||||| || | || || | | | |||| | ||||| Sbjct 1751645 CGCATGCTGTACGAAGACGACGTAACGC--ACGAGGACTTCCTCTGATATCTTTGTTATA 1751702 Query 282151 TTTTCTCTTGAAA-TCTTCAACACACCATGTTACA--AGACGATTATCAAAATCTTCACC 282207 || | |||||| || || ||| ||| | || | ||||| || || |||||||| Sbjct 1751703 CTTGC-GTTGAAACTCGTC--CACGAAATGCTTCAGCAAGCGATTGTCGAAGTCTTCACC 1751759 Query 282208 TCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAA---GTCCATCTTCAAGAGA 282264 || | | || | ||||| ||| ||| | || | ||| | || || |||| | Sbjct 1751760 ACCAAGATGTGTGTCTCCTGCCGTGGCTTTCACCTCGAACAACGAGCCCTCGTCAATCGT 1751819 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTT 282324 | | | |||||| ||||| ||||| | ||| ||||| || || || |||| | Sbjct 1751820 AAGGATGCTGACATCAAATGTTCCGCCACCGAGATCGAAAATCAGCACGTT--TTTC-TC 1751876 Query 282325 GTCTT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 | ||| ||||||| || || || || || | || ||||| || |||||||| || || Sbjct 1751877 GCCTTTCAGGTTTTTGTCGAGGCCGTAAGCGAGTGCGGCAGCTGTGGGTTCATTGATGAT 1751936 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | || || || || ||||| || || || || ||||| || | ||| | || Sbjct 1751937 ACGTATTACGTTCAGTCCTGCAATGGCCCCCGCGTCCTTGGTGGCCTGACGTTGAGCGTC 1751996 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 || || || || || || || || ||||| ||| | ||| Sbjct 1751997 ATTGAAGTAAGCGGGCACCGTGATTACGGCGTCTTTCACT 1752036 >seq4868 Length=209799 Score = 98.7 bits (108), Expect = 7e-15 Identities = 324/501 (65%), Gaps = 2/501 (0%) Strand=Plus/Minus Query 281387 ATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCA 281446 || ||||| ||||| |||||| || || || || | ||||||||| | | || | Sbjct 206240 ATTGTAATTTTCTTTTCTTTGTTGGTCGACTTCTCCACAGCAGTCACAATCAAGATGCTG 206181 Query 281447 TTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATC 281506 |||||||| | || || || || |||| || || ||||| | ||||| || || Sbjct 206180 TTGGCATCAATGTCGAAGGTCACCTCAAACTGCGGCGTACCTCTAGGGGCAGGAGGTATT 206121 Query 281507 CCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCG 281566 || || |||| ||||||| ||||| ||||| || | |||||| |||||| Sbjct 206120 CCAGTCAGCATAAACTTTCCCAGCAGCTTATTGTCTTTTGTCATGGCTCGTTCTCCCTCG 206061 Query 281567 AAAATTTGGAT-AGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTT 281625 | | || || ||||| | || ||| || || || || || || || || | | Sbjct 206060 TACACCTGAATGAGTAAGCA-AGATTGGTTGTCCGAGTATGTGGTGAAGGTCCTAGTCTG 206002 Query 281626 TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTC 281685 |||| ||||| || || || | | || | ||||| | ||||| || ||||| Sbjct 206001 TTTAGTTGGAATGGTGGTATTACGCTTGATCAGGGCAGTCATCACCCCACCGGCAGTTTC 205942 Query 281686 TAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGT 281745 | |||| || | |||||||| || | || | || | ||||| | ||| | Sbjct 205941 AATTCCAAACGACATGGGAGTGACGTCGAGAAGTAGCATGTCTTGAACTACCTCAGACTT 205882 Query 281746 TTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATT 281805 | || ||||| || || || ||| || || || || |||| ||||| || || Sbjct 205881 ATCGCCTCTGAGAATGGCAGCCAAAACAGCCGCTCCGTAAGCCACAGACTCATCCGGGTT 205822 Query 281806 AACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGG 281865 | || || || |||| |||||||||||||| | | |||||||| | || || Sbjct 205821 TATAGATTTGTTCAGTTCCTTACCATTGAAAAATTCTTTTAGAAGTTGCTGAATTTTTGG 205762 Query 281866 AATACGAGATGATCCTCCAAC 281886 ||| || | ||||||||| || Sbjct 205761 AATGCGGGTTGATCCTCCGAC 205741 >seq361 Length=37659 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || |||||| | ||||||| | | || ||| || || |||| |||||| ||| Sbjct 10662 CAAAGATGGTATTGTTGGGATTAATGGAAACTCGATTCTTCGCAGCATATCCAATGAGAC 10603 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | |||| ||||| || | |||||| ||| ||||| | || ||||| ||||| |||| Sbjct 10602 ATCCTGTTTCTGTGAAGGCAACATAACCTGGGGTTGTAAGGTTTCCTTGGTCATTGGCAA 10543 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAA 282847 ||||||| || || |||| ||| | | |||||||| Sbjct 10542 TAATTTCGACCTTTCCATGTTGTAAAATTTCTACACAA 10505 >seq3890 Length=880544 Score = 93.3 bits (102), Expect = 3e-13 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| || || ||| | || || | || |||||| || || ||||||||||| ||| Sbjct 736694 CAAAGATGGTGTTGTTGGGGTTCATGGCGACTTGATTCTTTGCAGCATCTCCAATGAGAC 736753 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | ||||| ||||| || | |||||| || ||||| || || ||||| ||||| |||| Sbjct 736754 GCTCTGTGTCTGTGAAGGCAACATAACTAGGCGTTGTACGGTTTCCTTGGTCATTGGCAA 736813 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||| || || || | || | || || |||||| | || || || || |||| Sbjct 736814 TAATTTCGACCTTGCCGTGCTGGAAGACTCCCACACAAGAGTATGTGGTGCCCAAGTCAA 736873 Query 282870 TACC 282873 | || Sbjct 736874 TTCC 736877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740186770586136