Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq5360 141 3e-28 seq2001 125 2e-23 >seq5360 Length=5598 Score = 141 bits (156), Expect = 3e-28 Identities = 377/572 (66%), Gaps = 13/572 (2%) Strand=Plus/Plus Query 182245 TTACCTGATGCAAGAGACGGATTAAAACCATCACAACGTCGAATTTTATATGCTTTATGG 182304 || || |||| |||||| || ||||||||| || ||||| || |||||||| | Sbjct 5015 TTGCCAGATGTAAGAGATGGCTTAAAACCAGTGCATCGTCGTATATTATATGCGATGAAT 5074 Query 182305 GATTTAGGAATGCTACCTCATAAACCATATCGAAAATCAGCAACAGTGAATGGCCACGTA 182364 || | ||||| | ||||||||| | ||| | || | | | || | || Sbjct 5075 GAAATGGGAATTAATAATAATAAACCATTTAAAAAGTGTGCTAGAATTGTAGGGGAAGTT 5134 Query 182365 ATGGGTAATTTCCATCCACATGGTGATAC------TTATGGTGTAATGGTAAATATGACA 182418 ||||||| || || ||||| || ||||| ||| | | | ||| |||| || Sbjct 5135 TTGGGTAAATTTCACCCACACGGCGATACCGCAGTTTACGATTCTTTAGTACGTATGGCA 5194 Query 182419 AATGAATTAAGTATTCGATATCCAGTAGTTGATGGTCAGGGTAACTTTGGTAACCCATTA 182478 | || | | | | || || || | |||| |||| ||||||||||| || ||| Sbjct 5195 CAAGATTGGAATTTACGTTACACACTTATTGACAGTCAAGGTAACTTTGG-AAGCCAG-- 5251 Query 182479 GATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAGATAATCTTG--GAA 182536 |||||||| || ||||||| |||||||| || || | |||||| | || |||| ||| Sbjct 5252 GATGGTGAAGGACCAGCAGCAATGCGTTACACAGAGTCCCGTTTACAAAAACTTGCAGAA 5311 Query 182537 TGTTAATGCTACAAGATGTTGACAAAAAAGTTGTTGACTTCCAACCTAACTATTCTGAAG 182596 ||| || || ||||| |||| ||| || ||||| || ||| ||||| | ||| Sbjct 5312 AGTTTAT--TAGAAGATATTGATAAAGAAACGGTTGATTTTCAAAATAACTTTGATGATT 5369 Query 182597 AAACAGAAGAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTTATAAATGGAGCAA 182656 | | |||||| |||||||| | | ||||| | ||| | |||||||| | Sbjct 5370 CTATGGTGGAACCAACTGTTTTACCAACTAGAATTCCTAATTTATTAGTAAATGGAAGTA 5429 Query 182657 CTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTTAAGCGAAGTAATTG 182716 |||||| ||| ||| ||||| | || | |||||||||||||||||||||| Sbjct 5430 GTGGTATAGCAGTAGGTATGGCTACTAATATGTTGCCACATAATTTAAGCGAAGTAATTG 5489 Query 182717 ATGGTATCTTAAATTTAATTCAAAATCCTGAAATTGATATTCATGGGTTAATGAAACACA 182776 ||||| | || || | ||| ||||| ||| | | ||| ||||| | Sbjct 5490 ATGGTTGTATGGCCTTTATCGATAATAAAGAAATCACCATTGAAGAGTTGATGAATTATG 5549 Query 182777 TTAAAGGTCCTGATTTACCTACTGGCGGGATT 182808 | |||| |||||||| |||||||| || ||| Sbjct 5550 TAAAAGCGCCTGATTTCCCTACTGGAGGTATT 5581 >seq2001 Length=3286380 Score = 125 bits (138), Expect = 2e-23 Identities = 184/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || |||||||| |||||||| |||||||| ||||| | | || | | || ||| Sbjct 923090 ACGGAAGCTGGATATGTAGGAGAAGATGTCGAAAATATCATCCTGAAGCTCCTTCAGGCA 923149 Query 188929 GCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAA 188988 ||||| || || ||||| ||||||||| || ||||| |||||||| ||| | || || Sbjct 923150 GCTGACTATGACGTCGAACGAGCGGAACGAGGCATTGTCTATATCGACGAAATCGACAAG 923209 Query 188989 ATT-GCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACA 189047 || || || | | || || | || || || || ||||| || || ||||| ||||| Sbjct 923210 ATCAGCCGCAAGAGC-GACAGTCCCTCGATCACGCGCGATGTCTCCGGAGAAGGCGTACA 923268 Query 189048 GCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCG 189107 |||||| | | ||| | || || || || || || || || || || |||||||| || Sbjct 923269 GCAAGCCCTCCTCAAATTGATCGAGGGCACCGTCGCCAATGTCCCGCCACAAGGTGGACG 923328 Query 189108 TAAACACCCTCACCAAGA 189125 ||||| || || ||||| Sbjct 923329 GAAACATCCGCATCAAGA 923346 Score = 87.8 bits (96), Expect = 6e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 411232 ATGGTGGTTGTAGCTCAATTGGTTAGAGCGCTAGATTGTGGATCTAGAGGTTGTGGGTTC 411291 ||||||| ||||||||| |||||||||||||| ||||||||||| ||||| | |||||| Sbjct 1146680 ATGGTGGGTGTAGCTCAGTTGGTTAGAGCGCTGGATTGTGGATCCGGAGGTCGCGGGTTC 1146739 Query 411292 GATCCCCATCATCCACCC 411309 || ||| ||| ||||| Sbjct 1146740 GAAACCCGTCACTCACCC 1146757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591726098563328