Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq2001 104 2e-17 seq664 104 2e-17 seq6557 98.7 7e-16 >seq2001 Length=3286380 Score = 104 bits (114), Expect = 2e-17 Identities = 128/173 (74%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 94600 TTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 94659 ||||| | ||| || | ||||||||| || ||||| ||||||||||| || ||||| || Sbjct 680500 TTGATCAAGCCGGTGAGCACATCCACTGACGGCCGTTGCGTCGCCAGCACAAGATGGATA 680559 Query 94660 CCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAG 94719 |||| ||| | ||| |||| || | || | || ||| |||| || |||||| | | Sbjct 680560 CCGGACGCCCTGGCCATCTGTGCCAGCCGAGCGATCTTGTCCTCGACATCTTTC--GGCG 680617 Query 94720 CCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGGAG 94772 ||| ||||||| | || || || ||||| | || |||||||| ||||| || Sbjct 680618 CCA-CCATCATTAAATCAGCCAGCTCATCGATCATCACCACGATATAGGGCAG 680669 >seq664 Length=24935 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 94579 AGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGC 94638 || || | ||| | |||| |||||| || ||||| | ||||||||| ||||||||| Sbjct 13786 AGGCGGGTGGGAATGTTGGCCTTGATAAGCCCCGTGATGACATCCACGCTCGGCCGCTGC 13845 Query 94639 GTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTG 94698 || ||||| | || || |||||| || |||||||||||||| | ||| |||| Sbjct 13846 GTGGCCAGAATCAGGTGGATGCCGCAGGCCCGCGCCTTCTGCGCCAGCCGGGCAATCAGC 13905 Query 94699 GCCTCAACCTCTTTCTTGTAGCCAC--CCATCATGAGGTCCGCGAGTTCATCCACCACTA 94756 | || | | |||||| |||| ||||||| ||||| || |||||||| | ||| | Sbjct 13906 TCTTCGATC---TTCTTG--CCCACCACCATCATCAGGTCGGCCAGTTCATCGATCACCA 13960 Query 94757 CCACGATGT 94765 ||||||||| Sbjct 13961 CCACGATGT 13969 >seq6557 Length=877522 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631 ||| ||||| || | || | |||| |||||| ||||| || | ||| || || || Sbjct 105013 GAAGGACAGGCGGGTCGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCGACACTCGG 104954 Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 94691 |||||||| || || || ||||| || || | || ||||| |||||||||| |||| | Sbjct 104953 ACGCTGCGTGGCGAGCACAAGATGGATACCCGAAGCCCGCGCTTTCTGCGCGAGGCGGGC 104894 Query 94692 AATGTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCCAC 94751 || | |||| |||| ||| | | || ||||||| ||||| || ||||| || | Sbjct 104893 GATCTGTTCCTCGACCTTTTT---GCCGACAACCATCATCAGGTCGGCCAGTTCGTCGAT 104837 Query 94752 CACTACCACGATGTAGGG 94769 | || ||||||||||| Sbjct 104836 GATGACGACGATGTAGGG 104819 Score = 89.7 bits (98), Expect = 3e-13 Identities = 196/287 (68%), Gaps = 10/287 (3%) Strand=Plus/Minus Query 94788 GTGGCGCACGCCAGCCTCCTGCATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCA 94847 || ||||||||| | || |||| | ||| || | |||||||| ||||| || Sbjct 104713 GTTGCGCACGCCCATCGCCGACATCAACTTGTAGCGCTTCTCCATCTC---GGTGACGCA 104657 Query 94848 CC---GCAGCGTTTTCACCGCCT-CGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGG 94903 || |||||| || |||||| | ||| || || || || ||| || ||||| | Sbjct 104656 CCAGTGCAGCGCGTTAGCCGCCTGCTTCATG-TCGGTGACGACCGGCGCCAGCAGGTGCG 104598 Query 94904 GGATACCGTTGTACGGGGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACC 94962 |||| || | ||| | ||||| | ||| |||||||||| ||||| || ||| Sbjct 104597 GGATGCCTTCGTAGATCGAAAGCTCAAG-CATCTTGGGGTCGACCATGAGCAGACGCACC 104539 Query 94963 CGATCAGGGGTCGCCCGGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTG 95022 |||| || ||| |||||||| ||| | | ||| | ||||| | |||||| Sbjct 104538 TGATCCGGCTCGGCCTTGTAGAGCATCGACAAGATCATCGCGTTGACACCGACCGACTTG 104479 Query 95023 CCCGATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAG 95069 ||||| ||||||| || || |||||||||||||| || ||||||| Sbjct 104478 CCCGAACCGGTCGTTCCGGCGACCAGCAGATGCGGTGTCCTGGCCAG 104432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340084143683648