Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_024134.1 Length=139020 Score E Sequences producing significant alignments: (Bits) Value seq4979 134 1e-26 >seq4979 Length=1283317 Score = 134 bits (148), Expect = 1e-26 Identities = 224/320 (70%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 135719 CGAATTATTTCTAACCTATCCCTCATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCA 135778 || || || || | || ||||| ||| || ||||||||||| |||||||||| | ||| Sbjct 8730 CGGATAATCTCCAGCCGATCCCGCATCAACCCCAGCCAAATCGAATGCTCCACCCCATCG 8789 Query 135779 TCGTAGTGCTCAAAAGCCCTTCCGGTATTGAATGGTGGGTCGATGTAAACACACTTCACT 135838 ||||| ||| ||| || || || || ||| | || ||||| || |||| |||||||| Sbjct 8790 TCGTAATGCGTAAACGCACTGCCCGTGTTGTACGGCGGGTCAATAAAAACGCACTTCACC 8849 Query 135839 TTGCCTGTATACTCTTGCTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGT 135898 || || ||||| || ||||| | |||||||| || | | ||| || ||||| || || Sbjct 8850 TTCCCCGTATATTCCTGCTCCAAGGCCTTCAACGCCAGCAGGTTGTCACCAAAGATAAGC 8909 Query 135899 TTATTATCAAAAATATCGTTTTCGGTCACTTTCTG-GCTGCGGTAAGACT-TGCT-CGAA 135955 | ||||| |||| ||| ||| || || |||| | || | || || | Sbjct 8910 TGGTTATCGAAAAAGTCGGCGCTGGTGACACGGTGCTTTGCGTGGTGGCTATTCTCCGGA 8969 Query 135956 TCTTCTAACAAAATGTGCGGCTCTAGCTTTTTGCGCTCGTTTTTACCTATCCAGGTAAGT 136015 || | ||||||||| ||||||| ||||| ||| | | || || ||||| || ||| Sbjct 8970 TCGCCCAACAAAATGCGCGGCTCCAGCTTCGGACGCGCATCCTTGCCAATCCATGTCAGT 9029 Query 136016 TCTAATTTAGTTTTGCTCAT 136035 |||| || || || ||||| Sbjct 9030 TCTAGCTTTGTGTTTCTCAT 9049 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 135719 CGAATTATTTCTAACCTATCCCTCATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCA 135778 ||||| || || | || ||||| ||| || ||||||||||| ||||||||||| | ||| Sbjct 967149 CGAATAATCTCCAGCCGATCCCGCATCAACCCCAGCCAAATCGAATGCTCCAGCCCATCG 967208 Query 135779 TCGTAGTGCTCAAAAGCCCTTCCGGTATTGAATGGTGGGTCGATGTAAACACACTTCACT 135838 ||||| ||| ||| || || || || || | || || || || | ||||||||||| Sbjct 967209 TCGTAATGCGTAAACGCGCTCCCCGTGTTATACGGCGGATCAATAAACACACACTTCACC 967268 Query 135839 TTGCCTGTATACTCTTGCTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGT 135898 || | | |||| ||| |||||||| || || | |||||||| ||||||||||| Sbjct 967269 CGCCCCGAAAACTCCGCCTCCAGCGCCTTTAACGCCAGCAAGTTATCCCCAAAAATCAGC 967328 Query 135899 TTATTATCAAAAATATC 135915 ||||||||||| ||| Sbjct 967329 CGATTATCAAAAACATC 967345 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 134755 GTAATAGCGGAAGCCACCACCACCTTGCCAGTTTACAGACTTAG-AAATACCCCCTTGAT 134813 ||| ||||||||||| || || || | |||| | || | ||| | || || ||||| | Sbjct 7865 GTAGTAGCGGAAGCCGCCGCCGCCCTTCCAGCTAACCG-CTTGGCTGATGCCGCCTTGGT 7923 Query 134814 CTTCACCATCGATCACTTTTTCCAAGCGCGGAATAATATGGGTATGACAATGATCACCTA 134873 | || || ||||| ||||||| || |||||||| || || ||||| || || || || | Sbjct 7924 CCTCGCCTTCGATGACTTTTTTCAGACGCGGAATGATGTGCGTATGGCAGTGCTCGCCCA 7983 Query 134874 GCTCGATTGAGATCCAACGTCTTTTCATCTTGTGAGCTACAGCAGCAGTAGTTCCCGAAC 134933 |||||| |||||| || | ||| ||||| || || || | || || || |||| Sbjct 7984 ACTCGATCATGATCCAGCGGCGACCCATTTTGTGGGCGACGGCGCCGGTGGTGCCGGAAC 8043 Query 134934 CACCGAATGAATCCAATACCAAATCGCC 134961 | |||| || || | || || ||||| Sbjct 8044 CCGCGAAGGAGTCGAGAACTAAGTCGCC 8071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444685767068800