Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq1459 89.7 5e-13 seq112 82.4 7e-11 >seq1459 Length=10684 Score = 89.7 bits (98), Expect = 5e-13 Identities = 213/308 (69%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 111908 TCCTTTGCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACA 111967 ||| | || ||||| || ||||||| ||| || || |||| || ||||||| || || Sbjct 5380 TCCCTGGCCATCGCGTTGATGGTCAGGTCACGTCGTGCCAGGTCTTCTTCGAGCGTAACG 5321 Query 111968 TCTGGGCTGAAC-ATC-ACCTCGAAATCGTGGTATCCT-GCGCCAG-TTGAACGCTCGGT 112023 |||| |||| || | || || | | |||||| | | || ||| || || || Sbjct 5320 G-TGGG-TGAAGTATGGATTTCAAACCCTTTGTATCCACGTGACACCTTG--CGTTCTGT 5265 Query 112024 ACGGGCCAGGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACC 112083 || ||||| || |||||||| | ||| || ||||||||| | || || || | || Sbjct 5264 GCGTGCCAGTGCATACTCTTCATGGGTATCGGGATGCAGGAATACGGGAAAGTCTTTCCC 5205 Query 112084 GACTTGCTCGA-AGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGT 112142 || | ||| ||||||| || |||||| ||| | ||||||||||| || || || | Sbjct 5204 CACCGGG-CGATAGCCGAGCCGCACCATCTCCTCGGGCGTGGAGCCGACAACGACATAAT 5146 Query 112143 CACGGTCTTTG-CTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAG 112201 |||| || ||| | ||| ||| ||| || ||||| | ||||| ||||| ||| Sbjct 5145 CACGATCCTTGACGGGCAA-GCCCGACAGCGTGTCACGGACGGAACCGCCAACCAGGTAG 5087 Query 112202 ATTTTCAT 112209 |||||||| Sbjct 5086 ATTTTCAT 5079 >seq112 Length=422422 Score = 82.4 bits (90), Expect = 7e-11 Identities = 199/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG 111973 || || ||||| ||||||||||| |||||||| | ||| ||||| | || ||||||| Sbjct 90929 GCCATGGCATTGATGGTCAAGTCGCGGCGGGCAAGATCATCTTCCAGCGTGACATCTG-- 90872 Query 111974 CTGAA-CATC-ACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCA 112031 ||| | ||| | | || |||| || || || || || ||||||||||| | Sbjct 90871 CTGCAGCATGGAAGGCAAAGCCGTGATAGCCCCGACCGGTCTTGCGTTCGGTACGGGCAA 90812 Query 112032 GGGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCT 112091 | || || || || |||| ||||| ||| | || || || | |||||| | Sbjct 90811 GCGCATATTCCTCGCCGGTCAGCGGATGAAGGAAGACGGGAAAATCCTTGCCGACTGGGC 90752 Query 112092 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTT 112151 ||| || |||| | ||||| || | | || ||||||||| ||||| || ||||| Sbjct 90751 GGAAACCCCGTGCTAGCATCTGTTTCGGCGAGGCGCCGACCACCACGTAATCGCGGTCGG 90692 Query 112152 TGCTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 112209 | || | || | || | ||||| || || || ||||| || ||||| | ||| Sbjct 90691 CGTTCGCCCTGCCGAGCAACGCGTCGCGCACTGCACCACCGACGAGGTAGATCTCCAT 90634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477136501344320