Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2057 123 2e-23 seq3957 95.1 1e-14 >seq2057 Length=842785 Score = 123 bits (136), Expect = 2e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 |||| || || || || ||||| ||| |||||| || | ||||||||| || ||||| Sbjct 607757 GCGAGGGAAGCAAGGTTACACACTGCCACCTCATCAGGAGAGCTGTACTCCACAATCTCA 607816 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| ||||||||||| ||||| ||| | ||||| ||| ||| ||||| |||||| Sbjct 607817 GTGCAGAGATTGCTGCACTTGATGGTGCCAAGGTTCTGTTGGTTGGACTTGCGGTTGCAT 607876 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTG 148981 || || ||||| |||||||| || ||| ||||||||||| Sbjct 607877 GCATCTTTGTAGAGCATGTAGGGAGTGCCTGTTTCCACCTG 607917 >seq3957 Length=668572 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| || ||||| || || ||| ||| | ||||| ||||| ||||| ||| | Sbjct 478876 CTTTCTGAATGTTGTAGTCTGACAATGTGCGACCA-TCCTCAAGCTGTTTGCCAGCGAAG 478818 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || || || ||||| || ||||| |||||| ||| | | Sbjct 478817 ATCAGTCGCTGCTGATCAGGTGGAATGCCCTCTTTGTCTTGGATCTTGGCCTTCACATTA 478758 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| | ||||| || || | ||| | ||| || || || | ||||||||| Sbjct 478757 TCGATTGTGTCTGAAGGCTCAACCTCTAAGGTTATGGTCTTCCCTGTTAATGTTTTTACG 478698 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 478697 AAGATCTGCAT 478687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483366197620640