Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1514 131 4e-25 seq8278 87.8 4e-12 >seq1514 Length=8380 Score = 131 bits (144), Expect = 4e-25 Identities = 279/412 (68%), Gaps = 11/412 (3%) Strand=Plus/Plus Query 110691 CCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGGTGGTAAGAGA 110747 |||||||| | || ||||| || || || ||||| |||| |||||| ||| | Sbjct 3564 CCAATGTTGCGGGTATTCAATGATACCGCTCGCTATGTAGATCAGGGAGGTGGCAAGCGC 3623 Query 110748 AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAA 110807 || ||||||||||| || ||| | || ||||||||| | ||| | ||||| | || || Sbjct 3624 AAGGGCTCATTTGCCATATATTTGGAGCCTTGGCATGCCGATGTTTTTGAGCTTTTGCAA 3683 Query 110808 CTTCGTAAAAATCAAGGATTTGAAGAACAAA---GAGCACGTGATTTATTTTATGCAATG 110864 | ||||| || || | ||||| ||| | || |||||| | ||||| || ||| Sbjct 3684 TTGAAGAAAAACCACGG---TAAAGAAGAAATGCGTGCTCGTGATCTTTTTTACGCCATG 3740 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | |||||||| ||||| || || |||| || | | | ||||| || ||||| Sbjct 3741 TGGATACCTGATTTATTTATGAAGCGGGTGGAAGATAACGACGTTTGGTCGCTAATGTG- 3799 Query 110925 CCTCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 || || || | || || | | ||| ||||| | | |||||||| |||||| Sbjct 3800 CCCCAACGAATGCCCAGGCTTGGCCGATTGCTATGGCGAGGCATTTGAAGAGCTTTACAC 3859 Query 110984 AAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAA 111043 | || |||| |||||| || | || ||| | ||| ||||| | ||||| | Sbjct 3860 ACGTTACGAAAGAGAAGGAAAAGTACGTAAAACGGTAAAAGCCCAAGACTTATGGTTTGA 3919 Query 111044 AATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT 111095 ||| | ||| ||| | |||||||| || || || || | | ||||||| Sbjct 3920 AATATTGGAAAGCCAAATGGAAACTGGCACACCCTACATGCTATTTAAAGAT 3971 >seq8278 Length=235533 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAA--ATGTGGTT-GAGG 72212 |||||| || |||||| ||||||||||| ||| | || ||| ||| |||| | Sbjct 21489 CATTCCTGATACTACTTTTCCAAACACAACATGTCTTCCATCTAACCATGGGGTTTGTTT 21430 Query 72213 TGCAAGTGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAAC 72272 || | |||||||||||||| || ||| | ||| ||||| || |||||||||| Sbjct 21429 TGTA---GTAATGAAGAATTGAGAACCATTGGTATCTTTACCCGCATTGGCCATAGAAAG 21373 Query 72273 CAAACCTGCTTCTGAATGCTTTAATAAGAAATTCTCATCTTCAAAAGTTTCTCCATATAT 72332 | | ||||| | ||||||| || |||||| ||||| |||| | || ||||| || Sbjct 21372 CCATCCTGCACCATAATGCTTCAACTTGAAATTTTCATCAGCAAATCTCTCACCATAGAT 21313 Query 72333 ACTTTGACCT 72342 ||| ||||| Sbjct 21312 ACTACGACCT 21303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186675398231596