Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq367 141 2e-29 seq4821 129 1e-25 >seq367 Length=21361 Score = 141 bits (156), Expect = 2e-29 Identities = 203/284 (71%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 18003 CTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGCCGAATACGTCGGCCTCCTTACC 18062 ||| || || || || | || || || || ||||| || || || |||| || | ||| Sbjct 13096 CTCCTCCCGTTTTTCAACACCTTGATAACCCGCATCACCAAACACATCGGTTTCATCACC 13037 Query 18063 GTGCACCAACGCATGCGCTTGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCAGCACGGT 18122 |||| || || || || || || || |||| || || || || || || | || ||| Sbjct 13036 ATGCAGCAGTGCTTGTGCCTGAGTAACATCGTGAACATTCGCTGCTGTTCCGATCAGGGT 12977 Query 18123 ATGCACCAGCCCCGAGTCCGCATCCACGCCAATGTGCGCTTTCATTCCGAAATGCCACTG 18182 || || ||||| || | |||||| || || |||||| | ||||| ||||| |||||||| Sbjct 12976 GTGGACAAGCCCGGATTGCGCATCAACACCGATGTGCACCTTCATGCCGAAGTGCCACTG 12917 Query 18183 GTTACCTTTCTTGGTCTGGTGCATCTCGGGGTCGCGCTTGCCGCTGCCAT--TCTTGGTC 18240 || |||||| |||| || ||||| |||| |||||| || | || | |||||||| Sbjct 12916 CTTGCCTTTCCTGGTTTGATGCATTTCGGTATCGCGC--GCTCGTTCCTTGTTCTTGGTC 12859 Query 18241 GAGCTGGGCGCGGCAATCAGCGAGGCGTCGACCACCGTGCCCTC 18284 || ||||| |||||||||| ||| || || | ||| || || Sbjct 12858 GAAGGAGGCGCTGCAATCAGCGTGGCATCAACAATCGTACCTTC 12815 >seq4821 Length=3878 Score = 129 bits (142), Expect = 1e-25 Identities = 261/382 (68%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 17763 ATTGCTCAGGGCAAACAACGTATGTAACTGCTGCGTGTTCTTCACCAAGCCTCGATAGCG 17822 |||| ||| ||||||| || | | |||||| |||||| ||| ||| | || || Sbjct 3876 ATTGGACAGCGCAAACAGTGTCTTGATCTGCTGGCCGTTCTTGGCCAGGCCCAGGTAACG 3817 Query 17823 CACCTTCAAATGCCCGAACTGGCGCTTGATGACCCGGAACGGATGTTCTACGCGAGCACG 17882 |||||| | |||||||| |||||||| ||||| ||||| || || || || || Sbjct 3816 CACCTTGACGAAACCGAACTGACGCTTGATCACCCGAAACGGGTGCTCGACCTTGGCGCG 3757 Query 17883 AATGCGCGCCTTGACCCGCTCCAACTCATCGACGAGCGCACCCGACACGGTGTTCT---T 17939 ||| | |||||||||| ||| || |||| | ||| | | | || |||| | | Sbjct 3756 AATACTCGCCTTGACCTTCTCAGCCTTGTCGATCAAGGCATCTGTCGCGCTGTTTTCTTT 3697 Query 17940 GTCCAAGGCGCGGCGTTTGCTCGGTCGCAATGCCACATGCCAACGCACCTTCAACTTCTG 17999 ||||| |||||||| || |||| || || ||||| || | | ||| | Sbjct 3696 GTCCAGCTTCTTGCGTTTGCCAGGGCGCATGGCAACGTGCCACTGCCCACTGCTCTTG-G 3638 Query 18000 CACCTCTTCGCGCTTGTCGATGCCCTGGTAGCCGGCATCGCCGAATACGTCGGCCTCCTT 18059 || || | |||||||| | |||||||||||| ||||| |||| |||| | ||| | Sbjct 3637 CA--TCAGCTCGCTTGTCCACGCCCTGGTAGCCCGCATCAGCGAACACGTGTGTCTCTTG 3580 Query 18060 ACCGTGCACCAA-CGCATGCGCTTGCGTCACGTCGTTGACGTTGGCGGCCGTGCCCAGCA 18118 ||||||| ||| | ||| || | || |||||| |||||| | | |||| ||| Sbjct 3579 TCCGTGCAGCAAGCTGTTGCCCTCG-GTGACGTCGGCCACGTTGCCCGAGGTGCATCGCA 3521 Query 18119 CGGTATGCACCAGCCCCGAGTC 18140 | || |||||||| |||||||| Sbjct 3520 CCGTGTGCACCAGGCCCGAGTC 3499 Score = 109 bits (120), Expect = 1e-19 Identities = 257/376 (68%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 18318 GTTGACCGTCTGCAGAAATTGCTCGGCCAGTTGGTGTCGCTCCAGCAAGTGCCGAAAGCG 18377 ||||||||| ||||| || |||||||||| |||| || || ||| |||||||| Sbjct 3321 GTTGACCGTGGCCAGAATCTGGTCGGCCAGTTTGTGTTTTTCTAGGCGGTGACGAAAGCG 3262 Query 18378 CAGAATGCTGACCCGGTCCGGCAGTCGGCTTA-TGCCTCCCAGCCCCGCGAATTGCCGAT 18436 ||| ||| || ||| |||||||||| | |||||| || || || | || | Sbjct 3261 CAGGATGGTGCTTTCGTCAGGCAGTCGGCCAAATGCCTCG-AGTTGGGCAAACTCACGGT 3203 Query 18437 ACAACGGCACGTCGTACAGCGCCTCTTCCATCGCCACGTCCGTCAGCCCGAACCATTGCT 18496 ||| ||| || | | ||||||||||| ||| ||||| ||| ||||||||||| Sbjct 3202 ACAGCGGTGTATCAAAGAAGGCCTCTTCCATGGCCGGGTCCGACAGGTTGAACCATTGCT 3143 Query 18497 GCAGAAAGTGGATGCGCAGCATCGTTTCGACTGGAAACGGCTTCCGACCCG--TCGCCTT 18554 ||| ||||| | |||||||| || || | | ||||||| || |||| ||||| | Sbjct 3142 GCATGAAGTGCACCCGCAGCATGGTCTCCAGAGCAAACGGCGGTCG-CCCGTTTCGCCCT 3084 Query 18555 GACCGGCGCATGCGGCGCTATCA--ACG-CCAAAAACGCCTGCCACGGCACCA-CACGTT 18610 | | | | ||||| || | || ||| ||| ||| || || | |||| | Sbjct 3083 TCGCTGTAAAAG-GGCGCAATGAGTTCGACCAGTTGCGC---CCAGGGAACGACCACG-T 3029 Query 18611 CCATCTCATCCAGAAATACCTGCTTGCGCGTGCGTCGGTTGCTCAGGTCCAGGCCAAGGT 18670 |||||| | || || ||||||||||| || || |||||||| ||| ||| | Sbjct 3028 CCATCTGTTGCAAGAACACCTGCTTGCGGGTCTTGCGCGTGCTCAGGCTCAGATCAAAGC 2969 Query 18671 CGCTTTGTTTCATGGG 18686 ||||||||||||||| Sbjct 2968 TGCTTTGTTTCATGGG 2953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127871077641248