Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq112 170 2e-37 seq3574 104 2e-17 >seq112 Length=422422 Score = 170 bits (188), Expect = 2e-37 Identities = 382/570 (67%), Gaps = 34/570 (6%) Strand=Plus/Minus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||| |||||||||||| | ||||| | |||||||| | |||| |||| Sbjct 129418 TCTTCGGCTGGCAGATGCGTTTCGACCTGGCCAAGGGCTTTCCGGTGACGACCACCAAGA 129359 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 ||||||| || ||||| ||||| |||| | |||||||| | ||||||| || |||| Sbjct 129358 AGCTGCACCTCAAGTCAATCATTCACGAATTGTTGTGGTTCATTCAAGGCGACACCAACA 129299 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 || ||| ||||| || ||| || |||||||||| ||||| || | | ||| Sbjct 129298 TCTCGTACCTTCAGGAGCACGGAGTACGCATCTGGGATGCGTGGGCCGACGAGCACGGCG 129239 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 ||||||| || |||||||||||||||||| |||||||| Sbjct 129238 ACCTCGGCCCGGTCTACGGCAAGCAGTGG--------------------CGTCGCTGGGA 129199 Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTTGAAGAAGT 142540 | || || | || | ||||| |||||| | ||||| | | ||||||| Sbjct 129198 AACACCGGACGGTCGGGTC-ATCGACCAGATCGCGCAACTCATTCACGGCCTGAAGAACA 129140 Query 142541 CTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGG 142600 || | || || || |||||||| | || |||||||| | || ||||| |||||| Sbjct 129139 ACCCGGACTCCCGCCGGCACATCGTTTCGGCCTGGAACCCCGGCGATGTCGAGCACATGG 129080 Query 142601 CACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGC-GTCTGTCA 142659 | || || || || || ||||||| ||| | |||| ||| | || | ||||| Sbjct 129079 CCCTACCGCCCTGCCATTGCCTGTTCCAGTTCTATGTCG--CCGACG--GCAGGCTGTCC 129024 Query 142660 TGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCG 142719 |||||||| || ||||| || ||| || || ||||| || ||||||||||| || Sbjct 129023 TGCCAGCTCTACCAGCGCAGCGCCGACATCTTTCTGGGCGTACCCTTCAACATTGCCTCC 128964 Query 142720 TACGCGCTTCTCACACAGCTCATTGCTCGC---GA-ATGCGGTCTGGAACTCGGAGACTT 142775 ||||| || | || | | | ||||||| || ||||| | | || || || Sbjct 128963 TACGCCCTGTTTAC---GATGA-TGCTCGCTCAGATTTGCGGCTACCAGCCGGGCGAGTT 128908 Query 142776 CGTCCACACCTTCGGCAATTCGCACATCTA 142805 ||| |||||||||||| | ||||| |||| Sbjct 128907 CGTGCACACCTTCGGCGACGCGCACCTCTA 128878 >seq3574 Length=6226 Score = 104 bits (114), Expect = 2e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 142243 TTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAG 142302 || || || |||||||| ||| ||||| ||||||| || | || ||||||||||| Sbjct 2725 TTTGGCCACCAGATGCGCTTCGATCTGAACGAAGGCTTCCCGGTGGTCACCACGAAGAAG 2784 Query 142303 CTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATC 142362 |||| ||||| |||||| | ||||| ||||||||||| |||||| | ||| | Sbjct 2785 GTGCACCTGAAAAGCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGATTCCAACGCC 2844 Query 142363 AAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAAC 142422 | || || |||| | ||| |||||| | |||||||| | || ||||| || Sbjct 2845 CGCTGGCTGCAGGATCGCGGCGTGCGCATCTGGAACGAATGGGCCGGGCCCGATGGCGAC 2904 Query 142423 CTCGGACCTGTCTACGGCAAGCAGTGG 142449 || || || || |||||| ||||||| Sbjct 2905 CTGGGGCCGGTGTACGGCGTGCAGTGG 2931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500442668615360