Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1224 145 9e-30 seq112 127 2e-24 seq3574 96.9 4e-15 >seq1224 Length=1352561 Score = 145 bits (160), Expect = 9e-30 Identities = 147/191 (77%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || | ||| || | |||||| |||||||| |||||||| || |||||||| || Sbjct 1087478 AGCCCAGTGATGTGTGCAAGCATGTATGTGAGCAGAGAGTAGCTAGCAATGTTGAACGGC 1087537 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCG---TCG 147102 ||||| ||||||||||| | || | |||||||| ||| |||||||| | | | ||| Sbjct 1087538 ACCCCGAGGCCCATGTCTGCTGAACGCTGGTACATCTGACACGAGAGATAGCGGCGCTCG 1087597 Query 147103 GCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCG 147162 |||||||| ||||| ||| |||||| || ||||| |||||||| |||||| ||| Sbjct 1087598 GCCACGTAGAACTGCACCAGACAGTGGCAGGGGGGCAGAGCCATGGCCCCCAGGTCAGCG 1087657 Query 147163 GGGTTCCAGGC 147173 || ||||| || Sbjct 1087658 GGATTCCAAGC 1087668 >seq112 Length=422422 Score = 127 bits (140), Expect = 2e-24 Identities = 184/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 146924 GCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT 146983 |||| | ||||||| |||| ||||||||| || | ||||||||| || || ||||||| Sbjct 128861 GCTCGAAGTGGTTGGCATAGAGGTGCGCGTCGCCGAAGGTGTGCACGAACTCGCCCGGCT 128920 Query 146984 TAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGG 147043 |||| | || || | ||| || | ||| | |||| ||| |||||||||| Sbjct 128921 GGTAGCCGCAAATCTGAGCGAGCATCATCGTAAACAGGGCGTAGGAGGCAATGTTGAAGG 128980 Query 147044 GGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGG 147103 | || ||||| ||||| | | |||||| |||||||| || ||| ||||||| Sbjct 128981 GTACGCCCAGAAAGATGTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCCTGCCGTCGG 129040 Query 147104 CCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG-GCGGGCAGGTCCGCG 147162 | || || |||||| ||||| ||||| ||||| || |||||| || | | || || Sbjct 129041 CGACATAGAACTGGAACAGGCAATGGCAGGGCGGTAGGGCCATGTGCTCG-ACATCGCCG 129099 Query 147163 GGGTTCCAGGCCGAGAC 147179 |||||||||||||| || Sbjct 129100 GGGTTCCAGGCCGAAAC 129116 >seq3574 Length=6226 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 146998 TGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCC 147057 || |||| ||||| || ||||||| ||||||||| ||||||||||| || |||||| Sbjct 3206 TGCGCCAGCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGGAAA 3147 Query 147058 ATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGG 147117 ||||| | | |||||| |||||||| || ||| |||||||| || |||||| Sbjct 3146 ATGTCGGCGCTGCGCTGGTAGAGCTGGCAGCTCAGGCGCCCTTCGGCCACATAGAACTGG 3087 Query 147118 CACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGC 147173 | | | ||||| ||| ||| ||||| | |||| || || ||||||||| Sbjct 3086 AAGAAGGCATGGCAGGGCACCAGGGCCATCTTGTGCAGTTCGGCCACGTTCCAGGC 3031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583422095030400