Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq2001 105 5e-18 seq6557 104 2e-17 seq664 98.7 7e-16 >seq2001 Length=3286380 Score = 105 bits (116), Expect = 5e-18 Identities = 129/174 (74%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 97670 TTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 97729 |||||| | ||| |||| |||||||| || ||||| ||||||||||| || ||||| || Sbjct 680499 TTTGATCAAGCCGGTGAGCACATCCACTGACGGCCGTTGCGTCGCCAGCACAAGATGGAT 680558 Query 97730 ACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTA 97789 ||||| || | ||| |||| || | || | || ||| ||||||| |||||| | Sbjct 680559 ACCGGACGCCCTGGCCATCTGTGCCAGCCGAGCGATCTTGTCCTCGACATCTTTC--GGC 680616 Query 97790 GCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGGAG 97843 ||| ||||||| | || || || || |||| || |||||||| ||||| || Sbjct 680617 GCC-ACCATCATTAAATCAGCCAGCTCATCGATCATCACCACGATATAGGGCAG 680669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 97947 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 98006 ||||||| ||| ||| ||| | ||||||||| |||| || | | | |||| |||| Sbjct 680941 TCGGTGATCACAGGCCGCAGCAAGTGGGGGATCCCGTCATACGACGAAAACTCCAGCATC 681000 Query 98007 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 98066 ||||| ||||||| || ||||| ||| || || | || | || ||| | | Sbjct 681001 TTCGGATCGATCAGGAGCAGCTTAACCTCATTCGGCCTTGCGGAAAACAGAATGCTCAAC 681060 Query 98067 AGCATCGAGTTGAT---GAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGG 98123 | ||||| |||| || ||| |||||| | |||||||||||| |||||||||||| Sbjct 681061 AACATCGTATTGAGCCCGACGCT---CTTGCCGGCTCCGGTGGCGCCGGCCACCAGCAGG 681117 Query 98124 TGGGGCAT 98131 || ||||| Sbjct 681118 TGCGGCAT 681125 >seq6557 Length=877522 Score = 104 bits (114), Expect = 2e-17 Identities = 134/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Minus Query 97658 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97717 ||| | ||||| ||||| ||||| |||| || || || || |||||||| || || Sbjct 104998 CGGGATGTTGGCCTTGATCAGGCCGGTGATCACGTCGACACTCGGACGCTGCGTGGCGAG 104939 Query 97718 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 97777 || ||||| ||||| | || ||||| ||||| |||| |||| | || | ||||||| Sbjct 104938 CACAAGATGGATACCCGAAGCCCGCGCTTTCTGCGCGAGGCGGGCGATCTGTTCCTCGAC 104879 Query 97778 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTA 97837 |||| ||| | | ||||||| ||||| || |||||||||| | || |||||||| Sbjct 104878 --CTTT-TTGCCGACAACCATCATCAGGTCGGCCAGTTCGTCGATGATGACGACGATGTA 104822 Query 97838 GGG 97840 ||| Sbjct 104821 GGG 104819 Score = 100 bits (110), Expect = 2e-16 Identities = 172/246 (70%), Gaps = 8/246 (3%) Strand=Plus/Minus Query 97899 TCCATCTCCACGGTGAGCCACC---GCAGCGTCTTAACCGCCT-CGTCGGGCTCGGTGAC 97954 |||||||| ||||| |||| |||||| ||| |||||| | || | |||||||| Sbjct 104673 TCCATCTC---GGTGACGCACCAGTGCAGCGCGTTAGCCGCCTGCTTCATG-TCGGTGAC 104618 Query 97955 CACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATCTTCGGGTC 98014 |||||| || ||||| ||||| || | ||| | || || | |||||| ||||| Sbjct 104617 GACCGGCGCCAGCAGGTGCGGGATGCCTTCGTAGATCGAAAGCTCAAGCATCTTGGGGTC 104558 Query 98015 GATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGA 98074 || ||||| || ||| |||| || | ||| ||||||||| || | | ||||| Sbjct 104557 GACCATGAGCAGACGCACCTGATCCGGCTCGGCCTTGTAGAGCATCGACAAGATCATCGC 104498 Query 98075 GTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGGCATTTT 98134 ||||| | ||||||||||| ||||| | || || |||||||| || || | | Sbjct 104497 GTTGACACCGACCGACTTGCCCGAACCGGTCGTTCCGGCGACCAGCAGATGCGGTGTCCT 104438 Query 98135 GGCCAG 98140 |||||| Sbjct 104437 GGCCAG 104432 >seq664 Length=24935 Score = 98.7 bits (108), Expect = 7e-16 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 97664 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 97723 ||||| |||||||| || |||| ||||||||| ||||||||||| ||||| | || Sbjct 13800 GTTGGCCTTGATAAGCCCCGTGATGACATCCACGCTCGGCCGCTGCGTGGCCAGAATCAG 13859 Query 97724 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTT 97783 || || ||| || ||||||||||| || | ||| |||| | |||| || || Sbjct 13860 GTGGATGCCGCAGGCCCGCGCCTTCTGCGCCAGCCGGGCAATCAGCTCTTCGA--TC-TT 13916 Query 97784 CTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 97836 |||| | ||||||| ||||| || ||||| |||| ||| |||||||||| Sbjct 13917 CTTGCCCACCACCATCATCAGGTCGGCCAGTTCATCGATCACCACCACGATGT 13969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351423694763872