Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1514 214 2e-50 seq1813 125 1e-23 seq2057 93.3 6e-14 >seq1514 Length=8380 Score = 214 bits (236), Expect = 2e-50 Identities = 489/731 (67%), Gaps = 4/731 (1%) Strand=Plus/Minus Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 ||| |||| || |||| || ||| ||| ||| | || || | ||| |||| || Sbjct 3874 TCTCTTTCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCCATAGCAATCGGCCAAGCCT 3815 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || ||||| || || ||||| | ||||| || || | ||| | || || ||||||||| Sbjct 3814 GGGCATTCGTTGGGGCACATTAGCGACCAAACGTCGTTATCTTCCACCCGCTTCATAAAT 3755 Query 69610 AGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 | ||| || ||||| | || ||| ||||| | | | ||||||| || || Sbjct 3754 AAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGCATTTCTTCTTTACCGTGG 3695 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 ||||| || | | | || ||| | || ||| | |||||| || || | |||||| || Sbjct 3694 TTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATATATGGCA 3635 Query 69730 A-TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | ||| || | || || ||||||||||||| || | || || | ||| | || Sbjct 3634 AATGAGCCCTTG-CGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATTGAATAC 3576 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 | || ||| || || || || || || | |||||||| || ||||| || | Sbjct 3575 CCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGAACCAGT 3516 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 || | | |||| || ||| || || || || ||| || || ||| ||||| Sbjct 3515 GGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTTGGCACA 3456 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG-TTAAGAAGAAAAC 69967 | || ||||| || || ||||| ||||| || ||| ||||| |||| || ||| | Sbjct 3455 TTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAATAA-AAAGC 3397 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 | || | || | | | || || ||||| |||||||| |||| || || || | Sbjct 3396 ATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCATGGGTAA 3337 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 ||||| || ||||| | ||| || |||||||| || || || ||||| ||||| Sbjct 3336 ACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGATATCTATACCATGAA 3277 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 | |||| || |||||||| | ||||||||| || |||||| | | || || |||| Sbjct 3276 TACCTACAGCTACACGCATGAGCATATGCTGTGGGCGTTCTGCTATATTTCCATCAATTT 3217 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 | || || ||||||||||| || |||||||| |||||||| | || ||| ||||| | Sbjct 3216 TTAAAAGATATGATTTTTCGAGTGTTTTAAAGCCAAAATAATCATAACCAAAATCTCTAT 3157 Query 70208 CGTAAATAATA 70218 | || || ||| Sbjct 3156 CATATATTATA 3146 >seq1813 Length=735787 Score = 125 bits (138), Expect = 1e-23 Identities = 160/220 (73%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | || ||| ||||| || |||||||| || |||||||| | Sbjct 440303 CCTCATCCCTAGAAATGAGCTCATTACTGAATGTCAGACCAGGCATCAGTCCACGCTTCT 440244 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || ||||||||||| ||| || ||||||||||| || ||||||||||| | Sbjct 440243 TTAGCCAGAAAATGGCAGCAAAGCTTCCTGAGAAGAAGATGCCCTCGACTGCTGCAAACG 440184 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATG---TATCCACTTCTGTGCCCAATCAG 39815 | || | || || || || | | | || ||| ||||| | | | ||||| || | Sbjct 440183 CCACGACTCGTTCACCATAGGTGGCAGAATCATGCGAAATCCAGTCCAGAGCCCAGTCTG 440124 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | ||| |||| ||||| ||||| || || || || || || Sbjct 440123 CCTTCCTCTTCACACACGGCATGGTCTCAATGGCGTTGAA 440084 >seq2057 Length=842785 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 68450 AGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATT 68509 |||| ||||| |||||||| ||| |||| || || ||||||||||||| | Sbjct 605927 AGAAGTGCATGGACGTTAGTTTTCCATAGTTTGGCTCAGCAATATGAATATTCAGACTCT 605986 Query 68510 GACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAA 68569 ||||||| || ||| ||||||||| ||| || ||||| | ||| |||| ||| |||| | Sbjct 605987 GACTTTGGTCAATGTAAGCTCCTCGATCAGCTGCCATCTCTATGATACGCTTCTGAGATA 606046 Query 68570 TTTCCCAAATAGTCTT 68585 | ||||| | |||||| Sbjct 606047 TCTCCCACACAGTCTT 606062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686831213651040