Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1514 109 7e-19 seq329 89.7 6e-13 >seq1514 Length=8380 Score = 109 bits (120), Expect = 7e-19 Identities = 461/712 (65%), Gaps = 31/712 (4%) Strand=Plus/Minus Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| ||||| | ||| || || || || || || | || ||||||||||| ||| | Sbjct 4039 ATTTCAGTACAAAGGTTTGAGCTTTTTATGGTGCCAAGGTTTTTTTGGTTACTTTTCGAG 3980 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| ||||| || | ||||||||||| || || || ||| | || | ||| |||| Sbjct 3979 TTGGCTGCATCTTTAAATAGCATGTAGGGTGTGCCAGTTTCCATTTG-GCTTTCC-AATA 3922 Query 111410 GCCTTCCAAACATCGGC----GGCTGGTACAATGGCGTT----GGCCCGTCCCTCCGCCT 111461 ||| || ||| | |||| ||| |||| | | | ||| | | | Sbjct 3921 T--TTCAAACCATAAGTCTTGGGCTTTTAC-----CGTTTTACGTACTTTTCCTTCTCTT 3869 Query 111462 -CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGC 111519 |||| |||||| || ||||||| |||| || | || |||| | ||||| || Sbjct 3868 TCGTAACGTGTGTAAAGCTCTTCAAATGCCTCGCC-ATAGCAATCGGCCAAGCCTGG-GC 3811 Query 111520 CTT-GTCTGGACAGAAAAGAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAG 111576 || || || || | || ||||| || | || | || ||||||||||| || | Sbjct 3810 ATTCGTTGGGGCACATTAGCGACCAA--ACGTCGTTATCTTCCACCCGCTTCATAAATAA 3753 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTT 111636 || || ||||||| || |||| ||||| | | || ||||| | ||| ||||| Sbjct 3752 ATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCACGCATTTCTTCTTTACCGTGGTT 3693 Query 111637 GAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 || | || | | | ||| | | ||| || ||||| ||||| | ||| | || | Sbjct 3692 -TTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATATATGGCAA 3634 Query 111696 TAGATCCCTTTCGACGCCCAGCT---TGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 || ||||| || ||| || |||| ||||||||| || || | || ||||| | Sbjct 3633 ATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATTGAATACCC 3574 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 111812 | | |||||| || || || | ||| |||||||| || ||| || | ||| Sbjct 3573 GCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGAACCAGTGG 3514 Query 111813 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 111872 | || |||| ||| ||| | |||||||| || ||| | | ||| |||| ||||| | Sbjct 3513 CCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTTGGCACATT 3454 Query 111873 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 111932 | | | || | || ||||| | |||||||| || || ||| | | ||||| Sbjct 3453 GCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTAATAAAAAGCATG 3394 Query 111933 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 111984 || | ||| || |||||||||| |||||||| | || || || || || Sbjct 3393 ACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCATG 3342 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 ||| |||||| |||| || || || || ||||| | ||| || |||| ||| |||||||| Sbjct 4647 CAATATAAATGCATCGGCAAGGCCCTGTACACCTATACCTATTGGTCGGTGGCGCATATT 4588 Query 111100 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 ||||| || || ||||| || ||| | ||| ||| || | | ||| |||||||| Sbjct 4587 CGACTTGCGAGCCTCTTCAACAGGGTAATAGTTTACGTCTATTATTTTGTTAAGATTTTT 4528 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAA 111201 ||||| || || | ||| |||||||||| || ||| Sbjct 4527 GGTAATTTGTTTGGTTACCTCACTTAGTTTTTCATGATTAAA 4486 >seq329 Length=129497 Score = 89.7 bits (98), Expect = 6e-13 Identities = 255/385 (66%), Gaps = 14/385 (4%) Strand=Plus/Plus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 || || ||||||||| || |||||||| | | |||| ||| || |||||| ||||| Sbjct 85185 GACCTGGCGATCAAAGCGCCCCGGGCGCAACAAGGCGGGATCGAGAATATCCGGACGATT 85244 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562 || || || || || | || || | | | ||||| ||||||||||| || | Sbjct 85245 GGTTGCAGCGATGACGATGATCCCGGCGTGACCTTCAAAACCATCCATCTCAACCAGCAT 85304 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG--GCATACCACCAGCACTGCGTTGC 11620 || || | || || || | ||| ||| |||| | || | || |||| ||| || Sbjct 85305 CTGGTTCAGGGTCTGCTCGCGCTCGTCA-TTGCCGCCGCCGA-GGCCGGCACCGCGATGA 85362 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG---TTGATTTTCGCGGGCG 11677 || |||||||| || || |||||||||| || || || || || | ||| Sbjct 85363 CGACCGACCGCATCGATTTCGTCAATGAAGATGATGCAAGGCGCGTGCTTCT---TGGCA 85419 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | || || | ||||| || | ||||||||| ||||| ||||| || ||||||| Sbjct 85420 TTCTCGAACATGTCGCGTACGCGCGCGGCACCCACGCCAACGAACATTTCAACAAAGTCG 85479 Query 11738 GCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGA 11795 | | | || | || || ||| || || || | |||||| || || || || || || | Sbjct 85480 GAGCCGGA--AATGCTGAAGAACGGCACCTTGGCTTCACCGGCAATCGCCCGCGCCAGCA 85537 Query 11796 GGGTCTTTCCCGTACCTGGCTTACC 11820 || || ||||| || || || || Sbjct 85538 AAGTTTTGCCCGTCCCCGGGTTGCC 85562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627961063785600