Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2001 141 1e-28 seq2502 132 5e-26 seq5144 122 1e-22 seq3878 109 6e-19 seq1514 107 2e-18 >seq2001 Length=3286380 Score = 141 bits (156), Expect = 1e-28 Identities = 236/336 (70%), Gaps = 19/336 (6%) Strand=Plus/Plus Query 158957 TGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGAC---CGGGCTGTTGGAGCATGA 159013 |||| ||||| |||||||| | ||| |||| || || ||| |||| ||||| | Sbjct 2680186 TGTGGGTCTCCCCAGTCGCCACAACATAGTCATCCGGCTTGTCGGCCTGT---AGCATCA 2680242 Query 159014 GCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCC 159073 |||||| || |||| || || ||| |||||||||||||||||||| | ||| | Sbjct 2680243 TCCACATCGCTTCGATATAGTCGCCAGCGAAGCCCCAGTCGCGCTTGGCATCGAGGTTAC 2680302 Query 159074 CGAGCTCGATGA--CTTTT------CCAGACTTTTTCCACTCAGCCAGACCGAGCGTGAT 159125 |||| || || ||| | |||| ||| | | | |||| | | | ||||| Sbjct 2680303 CGAGGAAGA-GATCCTTCTGGATGCCCAG-CTTGATGCGCGCAGC---AGCCTGGGTGAT 2680357 Query 159126 CTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGT 159185 |||||| ||||| ||| | | |||||||| ||||||||| || || ||||| ||| | Sbjct 2680358 CTTGCGGGTCACGAACGTTTCGCCGCGCCGCGGCGACTCATGATTGAAGAGAATACCGTT 2680417 Query 159186 ACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTT 159245 || || ||||| ||||||| || ||||| || || |||||||| || ||| ||| Sbjct 2680418 GCAGGCAAACAGATTATAGGCTTCCCGGTAGTTCACCGTGATCCAGTAGGCATAGACCTT 2680477 Query 159246 GGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 | ||||||| || || ||||||||||| || || Sbjct 2680478 CGCTGCGCCGTAGGGGCTGCGAGGATAAAACGGAGT 2680513 >seq2502 Length=269351 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || |||||||| || ||| ||||| |||||||| Sbjct 88687 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTGCCTCCCTGCAGACGCGTACCAAACTGA 88746 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || |||| |||||||||| |||||||| ||| ||| | ||||| |||| || | Sbjct 88747 CCGTTGGGCAGCAGGAGGTTGATGTTGTTGGAGCCGACGTAGTTCTGCGCCAGGTTGATG 88806 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||| | || |||||||||||||| ||||| | ||||| || | | | || Sbjct 88807 ATGGTGGACATGAGCGAGGCTTCACCGTGGTGGTACGCAGAGTGCTCGGCCACGGAGCCA 88866 Query 152209 GCCAACTGCGCCACCTTCATGTC 152231 |||| |||||| ||||| || || Sbjct 88867 GCCAGCTGCGCGACCTTGATCTC 88889 Score = 125 bits (138), Expect = 8e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| |||||||| || ||||||||||| || || Sbjct 88687 GTGAAGATGTAACGGGGGCTGGCAGCGTCCTTGCCTCCCTGCAGACGCGTACCAAACTGA 88746 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||| || |||||| | |||||||| ||| || |||| || |||| ||||| Sbjct 88747 CCGTTGGGCAGCAGGAGGTTGATGTTGTTGGAGCCGACGTAGTTCTGCGCCAGGTTGATG 88806 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| || ||||| ||||| ||||| | ||||| |||||| ||| Sbjct 88807 ATGGTGGACAT--GAGCGAGGCTTCACCGTGGTGGTACGCAGAGTGCTCGGCCACGGAGC 88864 Query 117483 CCGCCAGCTGAGCCACCTTCATGTC 117507 | |||||||| || ||||| || || Sbjct 88865 CAGCCAGCTGCGCGACCTTGATCTC 88889 >seq5144 Length=4231 Score = 122 bits (134), Expect = 1e-22 Identities = 225/322 (70%), Gaps = 11/322 (3%) Strand=Plus/Plus Query 124529 CACGAAATCTTCGGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCT 124587 |||||||||||||| | | || | |||| ||| |||||| |||| |||||||| Sbjct 1306 CACGAAATCTTCGGCG-TGGTCTTGTTGCAGCATCAGCCACTGCGCTTCAACGTAGTCAC 1364 Query 124588 CTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATT--GGCTTGGCCGT 124645 || || ||||| ||||||||||| |||||| || || | | | |||| | Sbjct 1365 GCGCATGGCCCCAATCGCGCTTGGCGCTCAGGTTGCCCAGGTACAGGCAGTCTTGCAGGC 1424 Query 124646 CTTGTTCCACTC-CGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTC 124704 | || | | | ||||| | | || |||||||||||||| ||| | ||| | Sbjct 1425 CGTGGGCGATGCGCGCCACGGCGCGGGTGATCTTGCGCGTCACGAAC---GTCTCGCCAC 1481 Query 124705 GCT-CAGACT--CGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGC 124761 || | | || ||||||||||||| ||||| | || ||| ||| || || | ||||| Sbjct 1482 GCAGCGGGCTTTCGTGGTTGAACAGGATGCCGTTGCAGGCATACAGGCCATAGGCCTCGC 1541 Query 124762 GGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGT 124821 |||| || ||| ||||| || ||| | ||||||| |||| | |||||||| || |||| Sbjct 1542 GGTAATTCACCGTGATCCAGTAGCCATACAGCTTGGCCACGGCGTAGGGGCTGCGCGGGT 1601 Query 124822 AGAATGGGGTGTTTTCATTTTG 124843 |||| || ||| |||| || || Sbjct 1602 AGAAGGGCGTGGTTTCCTTCTG 1623 Score = 111 bits (122), Expect = 2e-19 Identities = 201/287 (70%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 159001 TGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTG 159060 ||||| ||||| |||||| || || ||||| || |||| || ||||| ||||||||| Sbjct 1328 TGTTGCAGCATCAGCCACTGCGCTTCAACGTAGTCACGCGCATGGCCCCAATCGCGCTTG 1387 Query 159061 GCATCCATGTTCCCGAGCTCGATG-ACTTTTCCAGACTTTTTCCACTCAGCCAGACCGAG 159119 || || ||| || || | | | | | || ||| | | | | || || | | Sbjct 1388 GCGCTCAGGTTGCCCAGGTACAGGCAGTCTTGCAGGCCGTGGGCGATGCGCGCCACGGCG 1447 Query 159120 CG--TGATCTTGCGCGTCACAAAC-TCTGCTCCGCGCCGTTCCGACT--CATGGTTAAAC 159174 || |||||||||||||||| ||| ||| | || ||| | | | || | ||||| ||| Sbjct 1448 CGGGTGATCTTGCGCGTCACGAACGTCT-CGCCACGCAG--CGGGCTTTCGTGGTTGAAC 1504 Query 159175 AGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTAT 159234 || |||||| | || || ||||| ||||| |||||||||||| || |||||||| Sbjct 1505 AGGATGCCGTTGCAGGCATACAGGCCATAGGCCTCGCGGTAATTCACCGTGATCCAGTAG 1564 Query 159235 CCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGT 159281 ||| | ||||||| ||| |||| || || || || || || || || Sbjct 1565 CCATACAGCTTGGCCACGGCGTAGGGGCTGCGCGGGTAGAAGGGCGT 1611 >seq3878 Length=2387 Score = 109 bits (120), Expect = 6e-19 Identities = 207/295 (70%), Gaps = 21/295 (7%) Strand=Plus/Plus Query 124550 CTGCTGCAACATAAGCCACATGGCT-TGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCT 124608 |||||||| ||| |||||| || | | ||||| |||| ||||| ||||||||||||| Sbjct 91 CTGCTGCAGCATCAGCCAC-TGCATCTCAACGTAATCCTTGGCGTGGCCCCAGTCGCGCT 149 Query 124609 TGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGC--CGT--CTTGTTCCACTCCG-CCAA 124663 |||| || ||||| || || | ||| | | ||| | | | | | | |||| Sbjct 150 TGGCGTCGAGGTTGCCCAGGAACA--GGCATTTCTGCGTGCCCAGGTGAATGCGGGCCAA 207 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAAC---TCGGAACCGCG---TCGCTCAGACTCGTG 124717 | | || ||||||||||| || || ||| ||||| | || || || || Sbjct 208 GGCGCGGGTGATCTTGCGCGTGACGAAGGTTTCG---CCGCGGATTGGC---GATTCATG 261 Query 124718 GTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCAT 124777 |||||||| ||||| | || ||| |||| ||||| | |||||||||||| ||| || Sbjct 262 GTTGAACAAGATGCCGTTGCAGGCATACATGCCGTAAGCCTCGCGGTAGTTCACCGTGAT 321 Query 124778 CCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTG 124832 ||| || ||| | | ||||| |||| |||||||||| || ||||| || || ||| Sbjct 322 CCAGTAGCCATACATCTTGGCCACGGCATAGGGGCTGCGCGGGTAAAAGGGCGTG 376 >seq1514 Length=8380 Score = 107 bits (118), Expect = 2e-18 Identities = 318/486 (65%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 ||||| || ||||| || || | ||||| || ||||| | || ||| | ||| Sbjct 3336 TTTACCCATGCCACTCCCACATTATTCAATGCAGGTACACCAAAGCCACAGCTATCGTCA 3395 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||| | | | ||||| || ||||| || || || || ||||| || | ||| | Sbjct 3396 TGCTTTTTATTAACCATGAAAGACGACTCAATAGATGGTATTTACGATACATTAAAGCAA 3455 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG--TATCCACTGCTCGAACGTCCGTG 53450 |||||| | || || | | | |||||||||| || || || | || || | | Sbjct 3456 TGTGCCAAAATATCACAATCGGCGGGTGGTATTGGCCTAAGCATACAT--AATGTAAGGG 3513 Query 53451 CGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCC 53510 | | || | || || || || || ||| | | || || | || ||| | | Sbjct 3514 CCACTGGTTCGTATATAAAAGGTACAAATGGCACTTCAAACGGCATAATACCAATGTTGC 3573 Query 53511 GCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGT 53570 | || ||||| | || || || || || | ||||| ||||| ||||||||||| || | Sbjct 3574 GGGTATTCAATGATACCGCTCGCTATGTAGATCAGGGAGGTGGCAAGCGCAAGGGCTCAT 3633 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 | ||||| || | ||||| ||||| ||||| || | ||| || | | || | Sbjct 3634 TTGCCATATATTTGGAGCCTTGGCATGCCGATGTTTTTGAGCTTTTGCAATTGAAGAAAA 3693 Query 53631 ATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 | || ||| | ||||| ||||| ||| ||||| || ||| || ||||||| || || Sbjct 3694 ACCACGGTAAAGAAGAAATGCG-TGCTCGTGATCTTTTTTACGCCATGTGGATACCTGAT 3752 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGC 53749 | || ||| | |||||| | |||| | |||| || |||||||| ||||| ||| Sbjct 3753 TTATTTATGAAGCGGGTGGAAGATAACGACGTTTGGTCGCTAATGTGCCCCAACGAATGC 3812 Query 53750 CCCGGC 53755 || ||| Sbjct 3813 CCAGGC 3818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547154191952800