Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2502 140 4e-28 seq1112 120 3e-22 seq3878 105 8e-18 seq5144 104 3e-17 seq1514 102 9e-17 seq2446 91.5 2e-13 >seq2502 Length=269351 Score = 140 bits (154), Expect = 4e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 32009 AGGTGATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGT 32068 ||||||| | | | ||| ||||| ||| | |||| || ||||| ||||||||| Sbjct 88927 AGGTGATGTTCACGTGCTTCAAGCGTAACGACAAGCGTGAGATCAAGGTCGCGCAGCTGG 88868 Query 32069 CGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCA 32128 | |||| |||||| ||||| | || || |||||||| || || |||||| | ||||| Sbjct 88867 CTGGCTCCGTGGCCGAGCACTCTGCGTACCACCACGGTGAAGCCTCGCTCATGTCCACCA 88808 Query 32129 TTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTG 32188 | ||||||| || ||||||| ||||| | || ||| | ||| | || ||| | Sbjct 88807 TCATCAACCTGGCGCAGAACTACGTCGGCTCCAACAACATCAACCTCCTGCTGCCCAACG 88748 Query 32189 GACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCA 32248 | |||||||| || || || || |||||||| ||||| ||| ||||||||||||||| Sbjct 88747 GTCAGTTTGGTACGCGTCTGCAGGGAGGCAAGGACGCTGCCAGCCCCCGTTACATCTTCA 88688 Query 32249 CC 32250 || Sbjct 88687 CC 88686 >seq1112 Length=3255245 Score = 120 bits (132), Expect = 3e-22 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||||| |||||||||| ||||||||||| ||||| || |||||||||||||| | || Sbjct 2623096 AATTTACAGGCTAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATC 2623037 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||||| || || || ||||||| ||| | || |||||| Sbjct 2623036 TTCGCAGGCAAGCAGCTTGAGGATGGCCGCACACTCTCAGACTACAATATTCAGAAGGAA 2622977 Query 27598 TCCACTCTTCA 27608 ||||| ||||| Sbjct 2622976 TCCACCCTTCA 2622966 Score = 116 bits (128), Expect = 4e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 |||| |||||||||| ||||||||||| ||||| || |||||||||||||| | || || Sbjct 2620837 TTTGCAGGCTAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAGCAGCGCTTGATCTT 2620778 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 || || ||||| || ||||||| || ||||| | ||||| ||| | || |||||||| Sbjct 2620777 CGCAGGCAAGCAGCTTGAGGATGGCCGCACCCTTTCCGACTACAATATTCAGAAGGAATC 2620718 Query 27600 CACTCTTCA 27608 || ||||| Sbjct 2620717 TACCCTTCA 2620709 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||||||||| ||||||||||| ||||| || |||||||| ||||| | || || || | Sbjct 2620201 AGGCTAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAACAGCGCTTGATCTTCGCAG 2620142 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | ||||| || ||||||| || ||||| |||||||||| Sbjct 2620141 GCAAGCAGCTTGAGGATGGGCGCACCCTCTCAGACTATAA 2620102 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 27485 AGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 |||||||||| ||||||||||| ||||| || |||||||| ||||| | || || || | Sbjct 2622734 AGGCTAAAATCCAGGACAAGGAAGGAATCCCCCCAGACCAACAGCGCTTGATCTTCGCAG 2622675 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 | ||||| || ||||||| ||| ||||| ||||||| Sbjct 2622674 GCAAGCAGCTTGAGGATGGTCGCACCCTCTCAGACTA 2622638 >seq3878 Length=2387 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 24758 GGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGT 24817 ||||||||| ||| ||| |||||||| || ||||| ||||| ||||| |||| || Sbjct 403 GGTGCAGGAAGTGCCGCAGCGCGAGACCACGCCCTTTTACCCGCGCAGCCCCTATGCCGT 344 Query 24818 CTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGC 24877 | ||| ||| | |||||||| || ||||||||| ||||| | || || ||||| Sbjct 343 GGCCAAGATGTATGGCTACTGGATCACGGTGAACTACCGCGAGGCTTACGGCATGTATGC 284 Query 24878 ATGCAACGGAATTCTGTTCAACCATGAGTCG 24908 |||||||| || ||||||||||||| ||| Sbjct 283 CTGCAACGGCATCTTGTTCAACCATGAATCG 253 >seq5144 Length=4231 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24738 ACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTAT 24797 || || ||| ||| |||| ||||||||| | || ||| ||| ||||| || || || Sbjct 1659 ACCAGCGAGCTGTATGGCCTGGTGCAGGAAATTCCGCAGAAGGAAACCACGCCCTTCTAC 1600 Query 24798 CCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGT 24857 ||||| ||||| || | || | ||| ||| | |||||||| || ||| ||||| Sbjct 1599 CCGCGCAGCCCCTACGCCGTGGCCAAGCTGTATGGCTACTGGATCACGGTGAATTACCGC 1540 Query 24858 GAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCATGA 24904 |||||| |||| | ||||| |||||||| || ||||||||||| || Sbjct 1539 GAGGCCTATGGCCTGTATGCCTGCAACGGCATCCTGTTCAACCACGA 1493 >seq1514 Length=8380 Score = 102 bits (112), Expect = 9e-17 Identities = 380/586 (65%), Gaps = 20/586 (3%) Strand=Plus/Minus Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCC---TTCA 81235 ||||||| ||||| |||||||| || ||| || ||||| ||| | || |||| Sbjct 3816 CTGGGCATTCGTTGGGGCACATTAGCGACCAAACG---TCGTTATCTTCCACCCGCTTCA 3760 Query 81236 TGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCA 81294 | || ||||| ||||| | |||| || || || || ||| ||| || || | | Sbjct 3759 TAAATAAATCAGGTATCCACATGGCGTAAAAAAGATCACGAGCA-CGCATTTCTTCTTTA 3701 Query 81295 CCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATAC 81354 || ||||| ||| | | || || | | || |||||||| ||||||| ||| Sbjct 3700 CCGTGGTTTTTCTTCAATTGCAAAAGCTCAAAAACATCGGCATGCCAAGGCTCCAAATAT 3641 Query 81355 ACGGCGATCGACCCCTTGCGACGGCCACC---CTGGTTGACGTAACGGGCAGTCGCGTTA 81411 | ||| | || |||||||| |||||| ||| | || || || || || | || Sbjct 3640 ATGGCAAATGAGCCCTTGCGCTTGCCACCTCCCTGATCTACATAGCGAGCGGTATCATTG 3581 Query 81412 AATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC 81471 ||||| |||||||| || || || || | ||| || || ||||| ||| ||| Sbjct 3580 AATACCCGCAACATTGGTATTATGCCGTTTGAAGTGCCATTTGTACCTTTTATATACGAA 3521 Query 81472 CCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGA 81531 || |||| | || || || || || || ||||| | | | | ||| || | Sbjct 3520 CCAGTGGCCCTTACATTATGTATGCTTAGGCCAATACCACCCGCCGATTGTGATATTTTG 3461 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAG 81591 ||||| | || | || || ||||| || || || || | ||||||| | | Sbjct 3460 GCACATTGCTTTAATGTATCGTAAATACCATCTATTGAGTCGTCTTTCATGGTTA---AT 3404 Query 81592 AAACAGCTTGAC---ATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCG 81648 ||| ||| |||| | ||| || || || || |||||||| | ||| || || || Sbjct 3403 AAAAAGCATGACGATAGCTGTGGCTTTGGTGTACCTGCATTGAATAATGTGGGAGTGGCA 3344 Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTC 81707 || | || | || | ||| | | | ||||||||| || | | || || |||| Sbjct 3343 TGGGTAAACCATCGCTCTGAAAGTAAATTATAGGTTTCAATGGCCGAGTCGA-TATCTAT 3285 Query 81708 ACCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCGT 81752 ||| |||||||| | |||||||||||| | ||| | ||| |||||| Sbjct 3284 ACCATGAATACCTACAGCTACACGCATGAGCATATGCTGTGGGCGT 3239 >seq2446 Length=1160753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||| || || || ||||||||||| ||||| |||||||||| || Sbjct 439564 GGCATTCCCCCTGACCAACAACGGCTGATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGC 439623 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||| ||||| | || || ||||| || ||||| || ||| | || || || Sbjct 439624 ACACTCTCAGATTATAACATTCAGAAAGAATCGACCCTTCACCTTGTCCTCCGGCTCCGT 439683 Query 27628 GGTGG 27632 ||||| Sbjct 439684 GGTGG 439688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570245983440320