Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028248.1 Length=136896 Score E Sequences producing significant alignments: (Bits) Value seq4979 140 3e-28 >seq4979 Length=1283317 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 30703 CGAATTATTTCTAACCTATCCCTCATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCA 30762 ||||| || || | || ||||| ||| || ||||||||||| ||||||||||| | ||| Sbjct 967149 CGAATAATCTCCAGCCGATCCCGCATCAACCCCAGCCAAATCGAATGCTCCAGCCCATCG 967208 Query 30763 TCGTAATGCTCAAAAGCCCTCCCGGTATTGAATGGTGGGTCTATGTAAACACACTTCACT 30822 ||||||||| ||| || ||||| || || | || || || || | ||||||||||| Sbjct 967209 TCGTAATGCGTAAACGCGCTCCCCGTGTTATACGGCGGATCAATAAACACACACTTCACC 967268 Query 30823 TTGCCTGCATACTCTTGCTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGT 30882 || | | |||| ||| |||||||| || || | |||||||| ||||||||||| Sbjct 967269 CGCCCCGAAAACTCCGCCTCCAGCGCCTTTAACGCCAGCAAGTTATCCCCAAAAATCAGC 967328 Query 30883 TTATTATCAAAAATATC 30899 ||||||||||| ||| Sbjct 967329 CGATTATCAAAAACATC 967345 Score = 123 bits (136), Expect = 2e-23 Identities = 222/321 (69%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 30703 CGAATTATTTCTAACCTATCCCTCATTAAGCCCAGCCAAATGGAATGCTCCAGGCTATCA 30762 || || || || | || ||||| ||| || ||||||||||| |||||||||| | ||| Sbjct 8730 CGGATAATCTCCAGCCGATCCCGCATCAACCCCAGCCAAATCGAATGCTCCACCCCATCG 8789 Query 30763 TCGTAATGCTCAAAAGCCCTCCCGGTATTGAATGGTGGGTCTATGTAAACACACTTCACT 30822 ||||||||| ||| || || || || ||| | || ||||| || |||| |||||||| Sbjct 8790 TCGTAATGCGTAAACGCACTGCCCGTGTTGTACGGCGGGTCAATAAAAACGCACTTCACC 8849 Query 30823 TTGCCTGCATACTCTTGCTCTAGCGCCTTCAATGCTAATAAGTTATCTCCAAAAATCAGT 30882 || || | ||| || ||||| | |||||||| || | | ||| || ||||| || || Sbjct 8850 TTCCCCGTATATTCCTGCTCCAAGGCCTTCAACGCCAGCAGGTTGTCACCAAAGATAAGC 8909 Query 30883 TTATTATCAAAAATATCGTTTTCGGTCAC---TTTCTGGCTGTGGTAAGATTTGCT-AGA 30938 | ||||| |||| ||| ||| || | || ||||| | | | || | Sbjct 8910 TGGTTATCGAAAAAGTCGGCGCTGGTGACACGGTGCTTTGCGTGGT-GGCTATTCTCCGG 8968 Query 30939 ATCTTCTAACAAAATGTGTGGCTCTAACTTTTTGCGCTCGTTTTTACCTATCCAGGTAAG 30998 ||| | ||||||||| | ||||| | ||| ||| | | || || ||||| || || Sbjct 8969 ATCGCCCAACAAAATGCGCGGCTCCAGCTTCGGACGCGCATCCTTGCCAATCCATGTCAG 9028 Query 30999 TTCTAATTTGGTTTTGCTCAT 31019 ||||| || || || ||||| Sbjct 9029 TTCTAGCTTTGTGTTTCTCAT 9049 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 29739 GTAATAACGGAAGCCACCACCACCTTGCCAGTTTACAGACTTAGAAATACCACCTTGATC 29798 ||| ||||| ||||| || || |||||||| ||||| | || | ||| || |||| || Sbjct 966284 GTAGTAACGAAAGCCCCCGCCGCCTTGCCAATTTACCGCCTCACTAATGCCGCCTTTGTC 966343 Query 29799 TTCGCCATCGATCACTTTTTCCAAGCGCGGAATAATATGGGTATGACAATGATCACCTAG 29858 ||||||||| |||||||| | || |||||| || || || ||||| ||||| ||||| | Sbjct 966344 TTCGCCATCAATCACTTTCTTCAGGCGCGGGATGATGTGCGTATGGCAATGCTCACCCAA 966403 Query 29859 CTCGATTGAGATCCAGCGTCTTTTCATCTTATGAGCTACAGCAGCAGTAGTTCCCGAACC 29918 ||| || ||||||||| | |||||| || || || || | || || || ||||| Sbjct 966404 CTCAATCATGATCCAGCGCCGACCCATCTTGTGGGCGACCGCGCCGGTGGTGCCGGAACC 966463 Query 29919 ACCGAATGAATC 29930 |||| || || Sbjct 966464 GGCGAAGGAGTC 966475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 437889734767360