Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1224 154 1e-32 seq112 84.2 2e-11 >seq1224 Length=1352561 Score = 154 bits (170), Expect = 1e-32 Identities = 249/352 (71%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 29939 TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAG 29998 || ||||| |||| ||| || | |||||| ||||| ||||||||||| || ||||| || Sbjct 1087475 TCGAGCCCAGTGATGTGTGCAAGCATGTATGTGAGCAGAGAGTAGCTAGCAATGTTGAAC 1087534 Query 29999 GGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCG--- 30055 || |||||||| |||||||| | || | |||||| | |||||||||||| | | | Sbjct 1087535 GGCACCCCGAGGCCCATGTCTGCTGAACGCTGGTACATCTGACACGAGAGATAGCGGCGC 1087594 Query 30056 TCGCTCACGTAAAACTGACACATGGC-GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTC 30114 ||| |||||| ||||| ||| | | |||||| || || ||||||||| |||| ||| Sbjct 1087595 TCGGCCACGTAGAACTG-CACCAGACAGTGGCAGGGGGGCAGAGCCATGGCCCCCAGGTC 1087653 Query 30115 TTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAG-GT 30173 ||| ||||| || | || ||||||||| | ||| ||||| ||| | | | ||| | Sbjct 1087654 AGCGGGATTCCAAGCACTCATGATGATGCGTCGGTCATCTGGATTGGTTC-GTAGAGTCT 1087712 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGT 30233 | | | | |||| ||||||||| || | || ||| | |||| | || Sbjct 1087713 CAATCACTTGCTGCAACTGATCCACACCTTGTGTAGCGTGGTCCTCGTGCATGCCTCGGT 1087772 Query 30234 ACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30285 ||| || || || || | ||| ||||| || ||||| ||||| || || || Sbjct 1087773 ACTGGGCGCCAAAGTGTCGCCATTGGAAGCCATACACTGGTCCAAGATCGCC 1087824 >seq112 Length=422422 Score = 84.2 bits (92), Expect = 2e-11 Identities = 181/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 29897 TAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTC-TAGCCCGGTGACGTG 29955 |||| ||| ||||| || | | |||| || ||||| ||||| | ||||| | | || Sbjct 128878 TAGAGGTGCGCGTCGCCGAAGGTGTGCACGAACTCGCCCGGCTGGTAGCC-GCAAATCTG 128936 Query 29956 AGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCAT 30015 ||| | ||| ||| | || | |||| ||| ||||| |||||||| || || || Sbjct 128937 AGCGAGCATCATCGTAAACAGGGCGTAGGAGGCAATGTTGAAGGGTACGCCCAGAAAGAT 128996 Query 30016 GTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 30075 ||| | | |||||||||||| || || ||| |||||| || || ||||| | Sbjct 128997 GTCGGCGCTGCGCTGGTAGAGCTGGCAGGACAGCCTGCCGTCGGCGACATAGAACTGGAA 129056 Query 30076 CATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACAC 30135 || | ||||| || || || |||||| | | | || |||||||||||| | || Sbjct 129057 CAGGCAATGGCAGGGCGGTAGGGCCATGTGCTCGACATCGCCGGGGTTCCAGGCCGAAAC 129116 Query 30136 GATGATGCGCCTGTCTTCTGGGTTGTTC 30163 |||| || | | || ||||||||| Sbjct 129117 GATGTGCCGGCGGGAGTCCGGGTTGTTC 129144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406265654559312