Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq329 217 5e-52 seq775 131 5e-26 seq2001 120 1e-22 >seq329 Length=129497 Score = 217 bits (240), Expect = 5e-52 Identities = 191/238 (80%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||| ||||| | ||||||||| ||||| ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 ||| | | |||| ||||| ||||||||||| | |||| ||||||||||||||| || Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| | ||||| ||||| || || ||| ||||||||| | |||||||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCG 40411 |||||||||| ||||||||| ||| || |||||||||||||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 >seq775 Length=20816 Score = 131 bits (144), Expect = 5e-26 Identities = 182/251 (73%), Gaps = 8/251 (3%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||||||| | ||| ||||| ||||| ||||||||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAAC 40292 || || ||| ||||| ||| | ||||| || ||| ||||| |||||||| | Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCA-TAGGCCACCAGCGAGC 722 Query 40293 CGGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40352 | || |||| || || || || || ||| |||||| || |||||||| |||| Sbjct 723 CCGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGA 782 Query 40353 AGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCAT---CTGGATGATCATGTCGATCT 40409 | || ||||| ||||||||| |||||||||||| | |||||| | | ||||| Sbjct 783 AATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCATGCCCAGGATGACC---TTGATCT 839 Query 40410 CGTACTGGAGC 40420 || | | |||| Sbjct 840 CGAATTCGAGC 850 >seq2001 Length=3286380 Score = 120 bits (132), Expect = 1e-22 Identities = 167/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 ||||| || |||||| ||||| | ||| |||||||| || ||| || |||| Sbjct 2541117 CCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGATG 2541058 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||||||||| || || || |||||| ||||| | |||||| | |||||| || | Sbjct 2541057 ACCTCGCCGCGGCGATCCATGCA--GAAGTCCATGTCGATGTCGGGGAGGGACACACGTT 2541000 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 | || ||||||||||||||||||| || | || | || ||||| || || ||||| | Sbjct 2540999 CCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATGC 2540940 Query 40269 CGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 || |||||||||||| || || ||||| || || || || ||||| Sbjct 2540939 GCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160389187992264