Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq329 181 3e-41 seq2001 122 3e-23 seq775 111 5e-20 >seq329 Length=129497 Score = 181 bits (200), Expect = 3e-41 Identities = 183/238 (77%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||| ||||| | ||||||||| || || ||||| || || ||||| |||||||||| Sbjct 49908 GAAGTCAATGTCGAAGTCGGGCATCGACACCCGCTCCGGATTGAGGAAGCGCTCGAAGAG 49849 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 ||| | | | | || || ||||||||||| | ||| ||| ||| |||||||||| Sbjct 49848 CAGCGCATAGGCCAGCGGATCAAGGTCGGTGATGCGCAGGCTGTAGGCGACCAGCGAGCC 49789 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | ||||||||||| ||||| ||| ||||||||| | ||| |||||| |||||| Sbjct 49788 GGCGCCGGAGCCGCGCCCCGGGCCAACCGGCACGCCGTTGTTCTTGGCCCAGTTGATGAA 49729 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 |||||||||| |||||||| ||| || ||||||||| |||| ||||| |||| Sbjct 49728 ATCGGCGACGATCAGGAAGTAACCCGGAAAACCCATCTGGATGATGGTGTCGCACTCG 49671 >seq2001 Length=3286380 Score = 122 bits (134), Expect = 3e-23 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38997 TCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGAT 39056 |||| |||| |||||| ||||| | ||| |||||||||| || ||| || ||| Sbjct 2541118 TCCGAACGTAATGATCTGGGCGACGTGGTCTTTGCCGTACTTGTCCACGACATAGTTGAT 2541059 Query 39057 CACGTCGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGC 39114 || ||||| |||||| ||| |||||| ||||| | |||||| | ||| ||||| Sbjct 2541058 GACCTCGCCGCGGCGATC--CATGCAGAAGTCCATGTCGATGTCGGGGAGGGACACACGT 2541001 Query 39115 TCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATC 39174 || || ||||||||||||||||||| || | || || || ||||| || ||||| Sbjct 2541000 TCCGGATTCAGGAACCGCTCGAAGAGCAGGCTGTAGACGAGCGGATCCAGATCCGTGATG 2540941 Query 39175 CCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGAC 39227 | || ||||| ||| |||| || ||||| || ||||| || || ||||| Sbjct 2540940 CGCAGCGCGTAGGCGACCAGGCTTCCCGCCGCCGATCCGCGTCCCGGCCCGAC 2540888 >seq775 Length=20816 Score = 111 bits (122), Expect = 5e-20 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39081 GAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGAT 39140 |||||||||||| | ||| ||||| || || ||||| ||||||||||| || ||||| | Sbjct 604 GAAGTCGATGTCGAAGTCAGGCATCGACACCCGCTCGGGGTTCAGGAAGCGTTCGAACAG 663 Query 39141 GAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCC 39200 || || | | || |||||| | ||||| || || || || |||||||||| Sbjct 664 CAGGTTGTAGCGCAGCGGATCCAGGCCAGTGATGTTCAGCGCATAGGCCACCAGCGAGCC 723 Query 39201 AGCCGCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAA 39260 || | || ||||| || ||||| ||| |||||| || ||||||| ||||| Sbjct 724 CGCACCCGAACCGCGGCCCGGGCCCACCGGGCAGCCGTTGGCCAGGGCCCAGCGAATGAA 783 Query 39261 GTCGGCGACGACGAGGAAGTACGACGGGAACCCCAT 39296 || ||||| ||||||||| |||||| ||||| Sbjct 784 ATCACTGACGATGAGGAAGTAGCCCGGGAAGCCCAT 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159698062159752