Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ephemera_20danica_20[genbank_20GCA_5F000507165.1_202013-12-12] 9,036 sequences; 475,911,277 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq4979 253 1e-62 seq2001 158 6e-34 seq2100 105 3e-18 >seq4979 Length=1283317 Score = 253 bits (280), Expect = 1e-62 Identities = 551/824 (67%), Gaps = 3/824 (0%) Strand=Plus/Minus Query 66473 ACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTG 66532 ||||| || ||| | |||| || |||||| |||| || ||| | |||||||| Sbjct 188377 ACCGGTTCCCTCGGTTTGGATATTGCGCTGGGCGTCGGTGGCCTGCCGCGTGGCCGGGTT 188318 Query 66533 GTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCC 66592 || |||||||| || || ||||| || || ||| | || || || || || | || ||| Sbjct 188317 GTCGAAATCTATGGTCCGGAATCGTCCGGCAAGACCACGCTCTGCCTGCAGGTCGTCGCC 188258 Query 66593 AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCT 66652 | ||||||| ||| || || |||| || || || || || | || || || Sbjct 188257 GAAATGCAGAAGCTCGGCGGGGTTGCTGCCTTTATTGATGCCGAACATGCGCTCGATCCG 188198 Query 66653 GAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACC 66712 | || ||| || ||||| || | ||| | |||| || | || || |||||| Sbjct 188197 CAATATGCCCAGAAACTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAACCGGATACC 188138 Query 66713 GGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTC 66772 ||||| ||||| || || |||| ||| | || || ||| || | | |||| | Sbjct 188137 GGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGCGGTCCGGGTCGGTCGACATCATT 188078 Query 66773 GTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGAC 66832 ||| ||||||||||||| || || ||||| ||||| |||| ||||| || || ||| Sbjct 188077 GTCATTGACTCCGTGGCCGCGCTCACCCCGCGTGCCGAAATCGAGGGCGAGATGGGCGAC 188018 Query 66833 AGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACC 66892 || || ||||| || ||||| ||| ||||| |||||||||| || | || | Sbjct 188017 CAGATGGTTGGGCTGCATGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCAAC 187958 Query 66893 ATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAAC 66952 ||| | ||||| |||||| ||| |||||||| | ||| ||||||||| | Sbjct 187957 ATCAAGAAGACCAATACGCTGGTTGTCTTCATCAACCAGATCCGCATGAAGATCGGTGTC 187898 Query 66953 GTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCA 67012 || | |||| || || |||||||| || || || || | | ||| ||||| || Sbjct 187897 ATG---TTCGGCTCGCCGGAAACCACCACCGGTGGCAATGCGCTCAAGTTTTACGCTTCG 187841 Query 67013 GTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAAC 67072 || || | || | || || |||| | | ||| | ||||| || | | |||||| | Sbjct 187840 GTGCGCCTCGACATTCGCCGTATCGGCGCGATCAAGAAGGGCGACGAAGTTATCGGCAGC 187781 Query 67073 CGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTC 67132 ||| ||| |||||||||||||||||| | || || || |||| | ||| ||| Sbjct 187780 GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTCGCGCCCCCCTTCCGCGAAGCCATCTTC 187721 Query 67133 TCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGACCTGGCCGTGTCG 67192 | || | ||||| ||||| ||||| || ||| |||| || |||| ||| || || Sbjct 187720 GACATCCTCTACGGTGAGGGAATCTCCCGACAGGGCGAAGTCGTCGAAATGGGTGTCGCG 187661 Query 67193 CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACAAGAACGTCGCCCAG 67252 || ||||| | || || || ||||||| | ||| || | |||| | | |||| Sbjct 187660 CACAAGCTGGTCGACAAATCAGGTGCCTGGTACGCCTACAAGGGCGAGAAAATTGGCCAG 187601 Query 67253 GGCAAGCCCAAGGCCGTCCAGTGGCTCAAGGCCAACCCGGACAT 67296 |||||| ||| ||| | ||| |||||||| |||| || || Sbjct 187600 GGCAAGGACAATGCCCGCGAGTTTCTCAAGGCACACCCAGAGAT 187557 >seq2001 Length=3286380 Score = 158 bits (174), Expect = 6e-34 Identities = 430/650 (66%), Gaps = 15/650 (2%) Strand=Plus/Plus Query 66489 TGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGGGTGGTGGAAATCTACGGCC 66548 ||||| ||| || || ||||||| | ||| | || |||||| | || || | |||| Sbjct 2301338 TGGACATCGCGCTCGGAGTCGGGGGCTTGCCGCGCGGACGGGTGATTGAGATTTTTGGCC 2301397 Query 66549 CAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAATGCGCAGAAGGCCG 66608 | || || || || ||| | || || ||||| | ||| | | |||||| ||| Sbjct 2301398 CGGAGTCGTCCGGCAAGACGACGATGACGCTCCATTGTATTGCCGAGGTTCAGAAGACCG 2301457 Query 66609 GTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAG-TACGCCAAGGCG 66667 | ||| || |||| |||||| || || || ||||||| ||| || ||| | | Sbjct 2301458 GCGGCGTGGCGGCCTTCATCGATGCGGAACATGCCCTGGATT-TGACCTATGCCCAAAAG 2301516 Query 66668 CTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAGCAGGCCCTG 66727 || || ||| | || | | | ||| ||||| |||||||||||||||||| || Sbjct 2301517 CTGGGAGTGCAGGCAGATGAGTTGCTTGTGTCCCAGCCGGATACCGGCGAGCAGGCCTTG 2301576 Query 66728 GAGATCGTTGACCTCCTCGT--CAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCCG 66785 || |||| ||| || || ||| |||| | | || | |||| || || || | Sbjct 2301577 GAAATCGCTGAGACGCTGGTTCGCAGTGGAGCGATC-GACC-TGATCGTGGTGGATTCGG 2301634 Query 66786 TGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCC 66845 | || || || ||| || || || |||||||||| || || || ||| | ||| Sbjct 2301635 TCGCCGCGCTCACGCCACGGGCTGAAATCGAAGGCGAAATGGGCGATTCTCATATGGGCT 2301694 Query 66846 TGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGGCACCATCTCCAGCACCA 66905 |||| ||||| |||||||| |||||| |||| ||||| || | | ||||| | | Sbjct 2301695 TGCAGGCGCGGCTCATGTCGCAGGCCTTGCGTAAGCTGACGGCTGCTATCTCGAAGTCTC 2301754 Query 66906 ACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACGTGGGCTACGGCC 66965 | ||| | | | |||||||| | ||| |||||| || ||| | |||| Sbjct 2301755 AGACGACATTGATTTTCATCAACCAGATCCGCATGAAGATTGG---GGTGATGTTCGGC- 2301810 Query 66966 CGAAT---GAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTCAGTCCGTATGG 67022 ||| || ||||| || ||||| || || |||| |||||| |||| || || | | Sbjct 2301811 --AATCCCGAAACCACGACCGGCGGGAATGCGTTGAAGTTCTATTCCTCGGTTCGCCTTG 2301868 Query 67023 ATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACCCGGG 67082 || | || ||||||| | | || || || | || | | || ||||| |||| Sbjct 2301869 ATATTCGCCGCATCGAGTCTGTAAAAGAGGGGCAGGATGTGATGGGGAACCGGGTGCGGG 2301928 Query 67083 TGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAATGCCGAGTTC 67132 ||||||||||||| |||||| |||| |||||| ||| | || |||||| Sbjct 2301929 TGAAGGTCGTCAAAAACAAGATGGCGCCGCCGTTTCGCCAGGCGGAGTTC 2301978 >seq2100 Length=6174 Score = 105 bits (116), Expect = 3e-18 Identities = 186/271 (69%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 66468 TTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCC 66527 || ||||||| || | | || ||| ||||||||| | || || ||| | |||| Sbjct 289 TTTCCACCGGGTCCCTGGGGCTTGACATCGCCCTGGGAGTGGGCGGCCTGCCGCGCGGCC 230 Query 66528 GGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGG 66587 | ||||| |||||||||||||| |||||||| || ||| | || || || || | | Sbjct 229 GCGTGGTCGAAATCTACGGCCCGGAATCTTCGGGCAAGACCACGCTCACGCTGCAGGTGA 170 Query 66588 TGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGG 66647 | ||| | ||| ||| ||| ||| ||||| |||||| || || ||| | || | Sbjct 169 TCGCCGAGATGCAAAAGCTCGGCGGCGTGTGCGCCTTCATCGATGCCGAACACGCGCTCG 110 Query 66648 ACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCG 66707 | | | ||||| | |||||| ||| |||| | |||| | | ||||||| Sbjct 109 ATACGCAATACGCGCAAAAGCTCGGCGTGAACCTGCAAGACCTGCTCATCAGCCAGCCCG 50 Query 66708 ATACCGGCGAGCAGGCCCTGGAGATCGTTGA 66738 | |||||||||||||| ||||| ||||| || Sbjct 49 ACACCGGCGAGCAGGCACTGGAAATCGTCGA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242834054650824